RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA756891" and tax_kingdom = "Orthornavirae"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Orthornavirae · 2 ✖

bioproject 1

  • PRJNA756891 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19053983 19053983 PRJNA756891_P_NODE_10575_length_269_cov_1.571429_g10506_i0 PRJNA756891 10575 269 1.571429 4.22714401 root 1 Root_unresolved Root_unresolved 497 2.63e-136   NTclustered gi|299721|gb|S59673.1| 11138 g10506 i0 100 97.5204460966543 269 0 100 0 1 269 2251 1983 DIssE RNA gene 1 homolog {DI-2 RNA, defective-interfering 2 RNA} [mouse hepatitis virus MHV, Genomic RNA Recombinant, 2868 nt] blastn 26233 497 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus muris
24153943 24153943 PRJNA756891_P_NODE_8379_length_300_cov_1.356828_g8310_i0 PRJNA756891 8379 300 1.356828 4.070484 root 1 Root_unresolved Root_unresolved 555 1.7399999999999995e-153   NTclustered gi|299721|gb|S59673.1| 11138 g8310 i0 100 87.7266666666667 300 0 100 0 1 300 2729 2430 DIssE RNA gene 1 homolog {DI-2 RNA, defective-interfering 2 RNA} [mouse hepatitis virus MHV, Genomic RNA Recombinant, 2868 nt] blastn 26318 555 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus muris

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;