RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA756891" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 3 ✖

bioproject 1

  • PRJNA756891 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7110671 7110671 PRJNA756891_P_NODE_10946_length_265_cov_1.203125_g10877_i0 PRJNA756891 10946 265 1.203125 3.18828125 Chlamydomonas reinhardtii 3055 Plants Plants 235 2.24e-57   NTclustered gi|2082248650|ref|XM_043063418.1| 3055 g10877 i0 88.601 71.6830188679245 193 22 73 0 3 195 665 857 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_06g290950v5), mRNA blastn 18996 235 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
18583871 18583871 PRJNA756891_P_NODE_13335_length_248_cov_0.880000_g13266_i0 PRJNA756891 13335 248 0.88 2.1824 Auxenochlorella protothecoides 3075 Plants Plants 54.7 0.006   NTclustered gi|760437302|ref|XM_011397418.1| 3075 g13266 i0 100 0.479838709677419 29 0 12 0 92 120 495 523 Auxenochlorella protothecoides Homeobox protein unc-4-like protein partial mRNA blastn 119 54.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
25428898 25428898 PRJNA756891_P_NODE_5160_length_373_cov_1.026667_g5091_i0 PRJNA756891 5160 373 1.026667 3.82946791 Eukaryota 2759 Plants Plants 58.4 7.63e-4   NTclustered gi|33469607|gb|AY327517.1| 3055 g5091 i0 97.059 3.55764075067024 34 1 9 0 298 331 1002 1035 Chlamydomonas reinhardtii ATP-binding cassette half-transporter cadmium sensitive 1 (Cds1) gene, complete cds; nuclear gene for mitochondrial product blastn 1327 58.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;