RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "blastn", bioproject = "PRJNA756891" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • PVC group · 1 ✖

bioproject 1

  • PRJNA756891 · 1 ✖

analysis 1

  • blastn · 1 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19858999 19858999 PRJNA756891_P_NODE_10216_length_273_cov_1.935000_g10147_i0 PRJNA756891 10216 273 1.935 5.28255 Gimesia fumaroli 2527976 Bacteria Bacteria 91.6 5.31e-14   NTclustered gi|1712730954|gb|CP037452.1| 2527976 g10147 i0 96.364 2.66300366300366 55 2 20 0 75 129 5328543 5328597 Gimesia fumaroli strain Enr17 chromosome blastn 727 91.6 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Gimesia Gimesia fumaroli

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;