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contig_metadata

18 rows where analysis = "blastn", bioproject = "PRJNA753704" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 18 ✖

tax_clade 1

bioproject 1

  • PRJNA753704 · 18 ✖

analysis 1

  • blastn · 18 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
730903 730903 PRJNA753704_P_NODE_13421_length_325_cov_3.460317_g13060_i0 PRJNA753704 13421 325 3.460317 11.24603025 Saprolegnia ferax 4770 SAR_Eukaryotes SAR_Eukaryotes 510 4.19e-140   NTclustered gi|50261276|ref|NC_005984.1| 4770 g13060 i0 95.077 106.661538461538 325 14 100 2 1 325 10690 11012 Saprolegnia ferax mitochondrion, complete genome blastn 34665 510 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia ferax
730989 730989 PRJNA753704_P_NODE_21821_length_261_cov_2.968085_g21460_i0 PRJNA753704 21821 261 2.968085 7.74670185 Aphanomyces sp. 1982524 SAR_Eukaryotes SAR_Eukaryotes 483 7.12e-132   NTclustered gi|1923460157|gb|MW187635.1| 1982524 g21460 i0 100 101.011494252874 261 0 100 0 1 261 372 112 Aphanomyces sp. isolate CCRJB_30 small subunit ribosomal RNA gene, partial sequence; mitochondrial blastn 26364 483 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces sp.
731012 731012 PRJNA753704_P_NODE_23621_length_253_cov_0.866667_g23260_i0 PRJNA753704 23621 253 0.866667 2.19266751 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 462 8.95e-126   NTclustered gi|166046610|emb|CU367727.1| 100861 g23260 i0 99.605 18.8893280632411 253 1 100 0 1 253 549 297 Aphanomyces euteiches cDNA blastn 4779 462 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
2007024 2007024 PRJNA753704_P_NODE_18162_length_283_cov_8.990476_g17801_i0 PRJNA753704 18162 283 8.990476 25.44304708 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 405 1.74e-108   NTclustered gi|813199067|ref|XR_001099866.1| 695850 g17801 i0 93.455 73.3957597173145 275 14 96 4 1 273 1393 1665 Saprolegnia parasitica CBS 223.65 28S ribosomal RNA rRNA blastn 20771 405 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
2007196 2007196 PRJNA753704_P_NODE_5402_length_490_cov_3.798561_g5041_i0 PRJNA753704 5402 490 3.798561 18.6129489 Achlya hypogyna 1202772 SAR_Eukaryotes SAR_Eukaryotes 841 0   NTclustered gi|542687346|ref|NC_022178.1| 1202772 g5041 i0 97.566 109.7 493 8 100 2 1 490 6423 5932 Achlya hypogyna mitochondrion, complete genome blastn 53753 841 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya hypogyna
3282269 3282269 PRJNA753704_P_NODE_13263_length_327_cov_1.842520_g12902_i0 PRJNA753704 13263 327 1.84252 6.0250404 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 604 1.8799999999999993e-168   NTclustered gi|166044512|emb|CU367421.1| 100861 g12902 i0 100 22.4250764525994 327 0 100 0 1 327 59 385 Aphanomyces euteiches cDNA blastn 7333 604 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
3282341 3282341 PRJNA753704_P_NODE_19923_length_272_cov_1.989950_g19562_i0 PRJNA753704 19923 272 1.98995 5.412664 Achlya bisexualis 4766 SAR_Eukaryotes SAR_Eukaryotes 215 3.01e-51   NTclustered gi|2289|emb|X59936.1| 4766 g19562 i0 87.912 62.5294117647059 182 22 67 0 1 182 182 1 A.bisexualis gene for actin blastn 17008 215 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya bisexualis
5834753 5834753 PRJNA753704_P_NODE_3165_length_626_cov_2.629295_g2810_i0 PRJNA753704 3165 626 2.629295 16.4593867 Globisporangium splendens 82926 SAR_Eukaryotes SAR_Eukaryotes 562 2.32e-155   NTclustered gi|1899253468|gb|MT780642.1| 82926 g2810 i0 83.226 99.3594249201278 620 96 98 7 5 620 730 115 Globisporangium splendens isolate 63PYspl cytochrome oxidase subunit 1 (COXI) gene, partial cds; mitochondrial blastn 62199 562 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium splendens
7579995 7579995 PRJNA753704_P_NODE_2066_length_757_cov_4.776316_g1734_i0 PRJNA753704 2066 757 4.776316 36.15671212 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 387 1.83e-102   NTclustered gi|2055402917|ref|NC_056124.1| 360399 g1734 i0 77.545 83.8811096433289 668 132 87 15 91 749 20822 21480 Phytophthora fallax culture ICMP:17563 mitochondrion, complete genome blastn 63498 390 0.992307692307692 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora fallax
9659637 9659637 PRJNA753704_P_NODE_29688_length_231_cov_6.259494_g29327_i0 PRJNA753704 29688 231 6.259494 14.45943114 Peronospora tabacina 230439 SAR_Eukaryotes SAR_Eukaryotes 145 3.31e-30   NTclustered gi|948299304|ref|NC_028331.1| 230439 g29327 i0 86.029 58.7359307359307 136 17 58 2 3 137 14232 14098 Peronospora tabacina isolate 968-J2 mitochondrion, complete genome blastn 13568 145 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora tabacina
12210471 12210471 PRJNA753704_P_NODE_15610_length_303_cov_4.817391_g15249_i0 PRJNA753704 15610 303 4.817391 14.59669473 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 538 1.7799999999999995e-148   NTclustered gi|1111669722|ref|NC_032051.1| 112090 g15249 i0 98.68 105.683168316832 303 4 100 0 1 303 381 683 Aphanomyces astaci isolate AP03 mitochondrion, complete genome blastn 32022 538 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
16033650 16033650 PRJNA753704_P_NODE_19833_length_273_cov_1.100000_g19472_i0 PRJNA753704 19833 273 1.1 3.003 Phytopythium vexans 907947 SAR_Eukaryotes SAR_Eukaryotes 180 1.1e-40   NTclustered gi|2248513842|ref|NC_063815.1| 907947 g19472 i0 83.756 54.6923076923077 197 24 71 8 1 194 2304 2495 Phytopythium vexans culture CBS:119.80 mitochondrion, complete genome blastn 14931 180 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Phytopythium Phytopythium vexans
21133708 21133708 PRJNA753704_P_NODE_4417_length_537_cov_2.984914_g4058_i0 PRJNA753704 4417 537 2.984914 16.02898818 Peronosclerospora sorghi 230839 SAR_Eukaryotes SAR_Eukaryotes 167 1.81e-36   NTclustered gi|2431515601|ref|NC_070108.1| 230839 g4058 i0 73.852 78.2905027932961 501 96 90 24 54 537 648 166 Peronosclerospora sorghi isolate P6 mitochondrion, complete genome blastn 42042 167 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronosclerospora Peronosclerospora sorghi
22879663 22879663 PRJNA753704_P_NODE_26538_length_246_cov_0.901734_g26177_i0 PRJNA753704 26538 246 0.901734 2.21826564 root 1 Root_unresolved Root_unresolved 455 1.4500000000000002e-123   NTclustered gi|166044489|emb|CU367398.1| 100861 g26177 i0 100 98.4634146341463 246 0 100 0 1 246 198 443 Aphanomyces euteiches cDNA blastn 24222 455 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
23683921 23683921 PRJNA753704_P_NODE_10179_length_370_cov_1.774411_g9818_i0 PRJNA753704 10179 370 1.774411 6.5653207 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 628 1.28e-175   NTclustered gi|1111669769|ref|NC_032052.1| 157072 g9818 i0 97.305 107.264864864865 371 9 100 1 1 370 4101 3731 Aphanomyces invadans isolate NJM9701 mitochondrion, complete genome blastn 39688 628 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
24153687 24153687 PRJNA753704_P_NODE_20199_length_270_cov_11.380711_g19838_i0 PRJNA753704 20199 270 11.380711 30.7279197 Aphanomyces 100860 SAR_Eukaryotes SAR_Eukaryotes 496 9.51e-136   NTclustered gi|2099741709|gb|OK271022.1| 253176 g19838 i0 99.63 99.8851851851852 270 1 100 0 1 270 634 903 Aphanomyces cladogamus voucher CCIBt3854 small subunit ribosomal RNA gene, partial sequence blastn 26969 499 0.993987975951904 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces cladogamus
24153804 24153804 PRJNA753704_P_NODE_9859_length_374_cov_6.106312_g9498_i0 PRJNA753704 9859 374 6.106312 22.83760688 Aphanomyces 100860 SAR_Eukaryotes SAR_Eukaryotes 684 0   NTclustered gi|363498776|gb|JN662487.1| 120398 g9498 i0 99.732 100.021390374332 373 1 99 0 2 374 338 710 Aphanomyces stellatus strain GF 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 37408 689 0.992743105950653 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces stellatus
25428719 25428719 PRJNA753704_P_NODE_26900_length_245_cov_0.906977_g26539_i0 PRJNA753704 26900 245 0.906977 2.22209365 root 1 Root_unresolved Root_unresolved 453 5.1900000000000006e-123   NTclustered gi|166044610|emb|CU367519.1| 100861 g26539 i0 100 95.4489795918367 245 0 100 0 1 245 288 44 Aphanomyces euteiches cDNA blastn 23385 453 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;