RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA753704" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA753704 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16033671 16033671 PRJNA753704_P_NODE_21433_length_263_cov_3.115789_g21072_i0 PRJNA753704 21433 263 3.115789 8.19452507 Caenorhabditis elegans 6239 Nematoda Nematoda 270 6.09e-68   NTclustered gi|1972235554|ref|NM_001025879.7| 6239 g21072 i0 85.227 91.4182509505703 264 37 100 2 1 263 1079 1341 Caenorhabditis elegans Tubulin alpha-2 chain (tba-2), mRNA blastn 24043 270 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
22408472 22408472 PRJNA753704_P_NODE_23898_length_252_cov_0.871508_g23537_i0 PRJNA753704 23898 252 0.871508 2.19620016 Caenorhabditis elegans 6239 Nematoda Nematoda 403 5.4799999999999995e-108   NTclustered gi|1845979515|ref|NM_076129.6| 6239 g23537 i0 99.107 2.22222222222222 224 2 89 0 29 252 2381 2158 Caenorhabditis elegans Exocyst complex component 1 (sec-3), mRNA blastn 560 403 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;