RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA753704" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA753704 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1202076 1202076 PRJNA753704_P_NODE_741_length_1234_cov_8.730405_g524_i0 PRJNA753704 741 1234 8.730405 107.7331977 Gemmatimonas 173479 Bacteria Bacteria 2052 0   NTclustered gi|470475286|ref|NR_076270.1| 173480 g524 i0 96.677 223.22528363047 1234 41 100 0 1 1234 1712 479 Gemmatimonas aurantiaca strain T-27 23S ribosomal RNA gene, complete sequence blastn 275460 2052 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca
2007142 2007142 PRJNA753704_P_NODE_27922_length_243_cov_0.917647_g27561_i0 PRJNA753704 27922 243 0.917647 2.22988221 Gemmatimonas aurantiaca 173480 Bacteria Bacteria 355 1.49e-93   NTclustered gi|226088597|dbj|AP009153.1| 379066 g27561 i0 93.004 7.05349794238683 243 17 100 0 1 243 2062070 2062312 Gemmatimonas aurantiaca T-27 DNA, complete genome blastn 1714 355 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca
5834535 5834535 PRJNA753704_P_NODE_12905_length_331_cov_2.244186_g12544_i0 PRJNA753704 12905 331 2.244186 7.42825566 Gemmatimonas phototrophica 1379270 Bacteria Bacteria 479 1.2099999999999996e-130   NTclustered gi|1015602748|gb|CP011454.1| 1379270 g12544 i0 93.009 152.398791540786 329 21 99 2 1 328 2075175 2074848 Gemmatimonas phototrophica strain AP64, complete genome blastn 50444 479 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas phototrophica
12681702 12681702 PRJNA753704_P_NODE_21290_length_264_cov_2.157068_g20929_i0 PRJNA753704 21290 264 2.157068 5.69465952 Gemmatimonas 173479 Bacteria Bacteria 289 1.69e-73   NTclustered gi|226088597|dbj|AP009153.1| 379066 g20929 i0 86.466 52.8939393939394 266 32 100 4 1 264 4385 4122 Gemmatimonas aurantiaca T-27 DNA, complete genome blastn 13964 289 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;