RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA753704" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA753704 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3282330 3282330 PRJNA753704_P_NODE_18963_length_278_cov_2.682927_g18602_i0 PRJNA753704 18963 278 2.682927 7.45853706 Acytostelium subglobosum 361139 Evosea other_Eukaryota 193 1.45e-44   NTclustered gi|831791807|ref|XM_012904383.1| 1410327 g18602 i0 80 1.37769784172662 265 49 95 4 16 278 136 398 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 383 193 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
25428758 25428758 PRJNA753704_P_NODE_7480_length_425_cov_4.173295_g7119_i0 PRJNA753704 7480 425 4.173295 17.73650375 Eumycetozoa 142796 Evosea other_Eukaryota 209 2.3e-49   NTclustered gi|556912445|gb|KF662130.1| 142829 g7119 i0 85.93 45.5505882352941 199 24 46 4 16 212 533 337 Cavenderia aureostipes isolate KP3 ATPase1 (atp1) gene, partial cds; mitochondrial blastn 19359 209 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia aureostipes

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;