RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA753704" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA753704 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2007205 2007205 PRJNA753704_P_NODE_6242_length_460_cov_4.387597_g5881_i0 PRJNA753704 6242 460 4.387597 20.1829462 Paramoeba branchiphila 308475 Discosea other_Eukaryota 305 3.1e-78   NTclustered gi|226347442|gb|FJ807261.1| 308475 g5881 i0 78.901 72.795652173913 455 90 98 6 9 460 515 966 Neoparamoeba branchiphila strain AMOP1 elongation factor 1 alpha gene, partial cds blastn 33486 305 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba branchiphila
2007233 2007233 PRJNA753704_P_NODE_9262_length_385_cov_1.839744_g8901_i0 PRJNA753704 9262 385 1.839744 7.0830144 Paramoeba pemaquidensis 180228 Discosea other_Eukaryota 121 9.93e-23   NTclustered gi|1079488025|ref|NC_031417.1| 180228 g8901 i0 74.052 15.587012987013 343 68 87 18 52 385 32816 32486 Paramoeba pemaquidensis culture-collection CCAP:1560/4 mitochondrion, complete genome blastn 6001 121 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba pemaquidensis
16033780 16033780 PRJNA753704_P_NODE_3033_length_638_cov_2.596460_g2680_i0 PRJNA753704 3033 638 2.59646 16.5654148 Acanthamoeba polyphaga 5757 Discosea other_Eukaryota 182 7.75e-41   NTclustered gi|28194599|gb|AF479543.1| 5757 g2680 i0 73.045 16.1520376175549 601 128 91 28 56 638 235 819 Acanthamoeba polyphaga strain Sawyer CCAP 1501/3C 16S small subunit ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product blastn 10305 182 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba polyphaga
17309326 17309326 PRJNA753704_P_NODE_6934_length_439_cov_7.765027_g6573_i0 PRJNA753704 6934 439 7.765027 34.08846853 Paramoeba aparasomata 2583407 Discosea other_Eukaryota 91.6 8.99e-14   NTclustered gi|1767098935|gb|MK518072.1| 2583407 g6573 i0 73.065 10.9703872437358 323 61 71 16 1 312 14255 14562 Paramoeba aparasomata mitochondrion, complete genome blastn 4816 91.6 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba aparasomata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;