RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA753704" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA753704 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5834524 5834524 PRJNA753704_P_NODE_11425_length_350_cov_2.891697_g11064_i0 PRJNA753704 11425 350 2.891697 10.1209395 Fimicolochytrium jonesii 1396493 Fungi Fungi 182 4.04e-41   NTclustered gi|2432072721|ref|XM_053073277.1| 1396493 g11064 i0 77.448 9.83142857142857 337 54 94 15 12 340 537 859 Fimicolochytrium jonesii Hsp90 protein-domain-containing protein (EV422DRAFT_578072), mRNA blastn 3441 182 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii
10934959 10934959 PRJNA753704_P_NODE_11969_length_343_cov_1.959259_g11608_i0 PRJNA753704 11969 343 1.959259 6.72025837 Fimicolochytrium jonesii 1396493 Fungi Fungi 241 6.45e-59   NTclustered gi|2432064921|ref|XM_053069781.1| 1396493 g11608 i0 81.787 30.9125364431487 291 49 84 4 11 299 542 254 Fimicolochytrium jonesii tubulin, alpha, ubiquitous (EV422DRAFT_521958), mRNA blastn 10603 241 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii
16033698 16033698 PRJNA753704_P_NODE_2333_length_716_cov_5.847589_g1997_i0 PRJNA753704 2333 716 5.847589 41.86873724 Rhizophydium sp. 2012224 Fungi Fungi 440 1.31e-118   NTclustered gi|1866582435|gb|MT730610.1| 2012224 g1997 i0 81.93 77.0572625698324 570 58 78 26 1 562 3964 4496 Rhizophydium sp. isolate ARG035 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 55173 440 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales Rhizophydiaceae Rhizophydium Rhizophydium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;