RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA753704" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 6 ✖

bioproject 1

  • PRJNA753704 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3282301 3282301 PRJNA753704_P_NODE_16463_length_296_cov_3.923767_g16102_i0 PRJNA753704 16463 296 3.923767 11.61435032 Prototheca wickerhamii 3111 Plants Plants 128 4.44e-25   NTclustered gi|14212|emb|X68722.1| 3111 g16102 i0 85.156 48.4560810810811 128 16 43 3 1 127 2239 2364 P.wickerhamii mitochondrial gene for large ribosomal RNA blastn 14343 128 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Prototheca Prototheca wickerhamii
12210511 12210511 PRJNA753704_P_NODE_19310_length_276_cov_1.536946_g18949_i0 PRJNA753704 19310 276 1.536946 4.24197096 Dunaliella salina 3046 Plants Plants 73.1 1.95e-8   NTclustered gi|383930345|ref|NC_016732.1| 3046 g18949 i0 87.692 41.2355072463768 65 5 23 2 134 197 133610 133548 Dunaliella salina chloroplast, complete genome blastn 11381 73.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Dunaliellaceae Dunaliella Dunaliella salina
12681763 12681763 PRJNA753704_P_NODE_29490_length_233_cov_3.087500_g29129_i0 PRJNA753704 29490 233 3.0875 7.193875 Eukaryota 2759 Plants Plants 431 2.2899999999999996e-116   NTclustered gi|1201359270|gb|MF040792.1| 3078 g29129 i0 100 99.9914163090129 233 0 100 0 1 233 108 340 Auxenochlorella pyrenoidosa isolate HIT9 18S ribosomal RNA gene, partial sequence blastn 23298 431 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella pyrenoidosa
14760118 14760118 PRJNA753704_P_NODE_6032_length_467_cov_10.647208_g5671_i0 PRJNA753704 6032 467 10.647208 49.72246136 Jaagichlorella hainangensis 445995 Plants Plants 276 2.47e-69   NTclustered gi|1863124765|ref|NC_048968.1| 445995 g5671 i0 79.009 25.2612419700214 424 73 89 16 51 466 5692 5277 Jaagichlorella hainangensis culture CGMCC:NO7101 mitochondrion, complete genome blastn 11797 276 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Jaagichlorella Jaagichlorella hainangensis
16033574 16033574 PRJNA753704_P_NODE_13333_length_326_cov_2.889328_g12972_i0 PRJNA753704 13333 326 2.889328 9.41920928 Helicosporidium sp. ex Simulium jonesi 145475 Plants Plants 183 1.04e-41   NTclustered gi|386800430|ref|NC_017841.1| 145475 g12972 i0 77.37 51.8803680981595 327 62 98 9 1 318 10717 11040 Helicosporidium sp. ex Simulium jonesi mitochondrion, complete genome blastn 16913 183 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Helicosporidium Helicosporidium sp. ex Simulium jonesi
17779708 17779708 PRJNA753704_P_NODE_1474_length_895_cov_5.086375_g1168_i0 PRJNA753704 1474 895 5.086375 45.52305625 Marvania 97104 Plants Plants 91.6 1.91e-13   NTclustered gi|2724824493|gb|PP746561.1| 97105 g1168 i0 88.312 0.391061452513966 77 8 8 1 814 889 48115 48191 Marvania geminata culture SAG:12.88 mitochondrion, complete genome blastn 350 91.6 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Marvania Marvania geminata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;