RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA753151" and tax_superkingdom = "Archaea"

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tax_kingdom 2

tax_superkingdom 1

  • Archaea · 3 ✖

bioproject 1

  • PRJNA753151 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7579815 7579815 PRJNA753151_S_NODE_158486_length_231_cov_1.414894_g156196_i0 PRJNA753151 158486 231 1.414894 3.26840514 root 1 Root_unresolved Root_unresolved 427 2.9399999999999998e-115   NTclustered gi|2515741548|gb|CP117271.1| 2209 g156196 i0 100 101 231 0 100 0 1 231 3941915 3941685 Mutant Methanosarcina mazei strain Mm Mut 208, complete genome blastn 23331 427 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina mazei
18581437 18581437 PRJNA753151_S_NODE_155895_length_232_cov_93.582011_g153605_i0 PRJNA753151 155895 232 93.582011 217.11026552 Vulcanisaeta moutnovskia 985052 Archaea Archaea 52.8 0.021   NTclustered gi|323706731|gb|CP002529.1| 985053 g153605 i0 100 0.120689655172414 28 0 12 0 59 86 336127 336100 Vulcanisaeta moutnovskia 768-28, complete genome blastn 28 52.8 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Thermoproteales Thermoproteaceae Vulcanisaeta Vulcanisaeta moutnovskia
22407285 22407285 PRJNA753151_S_NODE_206578_length_200_cov_8.012739_g204288_i0 PRJNA753151 206578 200 8.012739 16.025478 Methanobacterium paludis 868131 Archaea Archaea 54.7 0.005   NTclustered gi|333824386|gb|CP002772.1| 868131 g204288 i0 100 0.145 29 0 15 0 6 34 1738574 1738546 Methanobacterium paludis strain SWAN1, complete genome blastn 29 54.7 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium paludis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;