RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

29 rows where analysis = "blastn", bioproject = "PRJNA753151" and tax_phylum = "Streptophyta"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Streptophyta · 29 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA753151 · 29 ✖

analysis 1

  • blastn · 29 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
730107 730107 PRJNA753151_S_NODE_253561_length_178_cov_0.948148_g251271_i0 PRJNA753151 253561 178 0.948148 1.68770344 Picea abies 3329 Plants Plants 58.4 3.24e-4   NTclustered gi|2835530366|dbj|LC777195.1| 3329 g251271 i0 100 1.14044943820225 31 0 17 0 148 178 58 28 Picea abies Pa-Kumamoto-2022 PaMurB mRNA for UDP-N-acetylmuramate dehydrogenase, complete cds blastn 203 58.4 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Pinales Pinaceae Picea Picea abies
1201808 1201808 PRJNA753151_S_NODE_115141_length_267_cov_1.808036_g112851_i0 PRJNA753151 115141 267 1.808036 4.82745612 Picea 3328 Plants Plants 377 3.55e-100   NTclustered gi|270142895|gb|BT109847.1| 3330 g112851 i0 96.889 1.68539325842697 225 7 84 0 43 267 660 436 Picea glauca clone GQ03212_P11 mRNA sequence blastn 450 377 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Pinales Pinaceae Picea Picea glauca
1201910 1201910 PRJNA753151_S_NODE_43961_length_379_cov_6.220238_g41693_i0 PRJNA753151 43961 379 6.220238 23.57470202 root 1 Root_unresolved Root_unresolved 54.7 0.01   NTclustered gi|1885270526|emb|LR862145.1| 296719 g41693 i0 96.875 0.160949868073879 32 1 8 0 309 340 721729 721760 Ananas comosus var. bracteatus genome assembly, chromosome: 17 blastn 61 54.7 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Bromeliaceae Ananas Ananas comosus
2005455 2005455 PRJNA753151_S_NODE_122322_length_260_cov_2.313364_g120032_i0 PRJNA753151 122322 260 2.313364 6.0147464 Musa acuminata 4641 Plants Plants 481 2.55e-131   NTclustered gi|2729585488|ref|XM_009400113.3| 214697 g120032 i0 100 4.44230769230769 260 0 100 0 1 260 319 578 PREDICTED: Musa acuminata AAA Group thioredoxin H1-like (LOC103982994), mRNA blastn 1155 481 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Zingiberales Musaceae Musa Musa acuminata
2006359 2006359 PRJNA753151_S_NODE_277462_length_168_cov_1.800000_g275172_i0 PRJNA753151 277462 168 1.8 3.024 Lolium perenne 4522 Plants Plants 165 1.74e-36   NTclustered gi|2922441096|ref|XM_051359443.2| 4522 g275172 i0 91.667 0.714285714285714 120 9 71 1 49 168 891 773 PREDICTED: Lolium perenne GPI-anchored protein LLG1 (LOC127333134), mRNA blastn 120 165 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Lolium Lolium perenne
3281724 3281724 PRJNA753151_S_NODE_295503_length_161_cov_3.050847_g293213_i0 PRJNA753151 295503 161 3.050847 4.91186367 Populus trichocarpa 3694 Plants Plants 54.7 0.004   NTclustered gi|161789311|gb|AC215629.1| 3694 g293213 i0 96.875 0.198757763975155 32 1 20 0 75 106 67432 67463 Populus trichocarpa clone POP044-D07, complete sequence blastn 32 54.7 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Malpighiales Salicaceae Populus Populus trichocarpa
4559089 4559089 PRJNA753151_S_NODE_35684_length_408_cov_3.668493_g33455_i0 PRJNA753151 35684 408 3.668493 14.96745144 Musa acuminata 4641 Plants Plants 52.8 0.039   NTclustered gi|2008914241|emb|HG996476.1| 214687 g33455 i0 100 0.0686274509803922 28 0 7 0 330 357 23635678 23635651 Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A10 blastn 28 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Zingiberales Musaceae Musa Musa acuminata
5833668 5833668 PRJNA753151_S_NODE_238665_length_184_cov_2.418440_g236375_i0 PRJNA753151 238665 184 2.41844 4.4499296 Quercus robur 38942 Plants Plants 333 5e-87   NTclustered gi|2293068434|ref|XM_050408491.1| 38942 g236375 i0 99.457 12.3532608695652 184 0 100 1 1 184 929 747 PREDICTED: Quercus robur GTP-binding protein SAR1A (LOC126708650), mRNA blastn 2273 333 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fagales Fagaceae Quercus Quercus robur
7108258 7108258 PRJNA753151_S_NODE_154866_length_233_cov_5.121053_g152576_i0 PRJNA753151 154866 233 5.121053 11.93205349 Zea mays 4577 Plants Plants 427 2.97e-115   NTclustered gi|195599332|gb|EU946978.1| 4577 g152576 i0 100 5.51931330472103 231 0 99 0 3 233 288 58 Zea mays clone 325666 mRNA sequence blastn 1286 427 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Zea Zea mays
7579840 7579840 PRJNA753151_S_NODE_205586_length_201_cov_2.278481_g203296_i0 PRJNA753151 205586 201 2.278481 4.57974681 Pinaceae 3318 Plants Plants 372 1.18e-98   NTclustered gi|121308528|dbj|AB026935.1| 3322 g203296 i0 100 102.572139303483 201 0 100 0 1 201 709 909 Cedrus deodara gene for 18S ribosomal RNA, partial sequence blastn 20617 372 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Pinales Pinaceae Cedrus Cedrus deodara
7579857 7579857 PRJNA753151_S_NODE_243966_length_182_cov_1.294964_g241676_i0 PRJNA753151 243966 182 1.294964 2.35683448 Eukaryota 2759 Plants Plants 52.8 0.015   NTclustered gi|2699132182|emb|OZ022198.1| 3755 g241676 i0 100 0.769230769230769 28 0 15 0 70 97 16589441 16589414 Prunus dulcis genome assembly, chromosome: 2 blastn 140 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Rosaceae Prunus Prunus dulcis
8383944 8383944 PRJNA753151_S_NODE_3327_length_1007_cov_25.019710_g2694_i0 PRJNA753151 3327 1007 25.01971 251.9484797 Malania oleifera 397392 Plants Plants 58.4 0.002   NTclustered gi|2532233495|ref|XR_009133862.1| 397392 g2694 i0 94.595 0.0367428003972195 37 2 4 0 543 579 540 504 PREDICTED: Malania oleifera uncharacterized LOC131144648 (LOC131144648), ncRNA blastn 37 58.4 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Santalales Ximeniaceae Malania Malania oleifera
10130523 10130523 PRJNA753151_S_NODE_149048_length_238_cov_1.379487_g146758_i0 PRJNA753151 149048 238 1.379487 3.28317906 Quercus 3511 Plants Plants 361 3.1299999999999995e-95   NTclustered gi|2293072727|ref|XM_050410658.1| 38942 g146758 i0 94.118 3 238 12 100 2 1 238 763 528 PREDICTED: Quercus robur indole-3-acetic acid-induced protein ARG2 (LOC126710274), mRNA blastn 714 361 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fagales Fagaceae Quercus Quercus robur
10130535 10130535 PRJNA753151_S_NODE_187468_length_211_cov_26.154762_g185178_i0 PRJNA753151 187468 211 26.154762 55.18654782 Eukaryota 2759 Plants Plants 54.7 0.005   NTclustered gi|2835530366|dbj|LC777195.1| 3329 g185178 i0 100 0.947867298578199 29 0 14 0 183 211 56 28 Picea abies Pa-Kumamoto-2022 PaMurB mRNA for UDP-N-acetylmuramate dehydrogenase, complete cds blastn 200 54.7 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Pinales Pinaceae Picea Picea abies
10933581 10933581 PRJNA753151_S_NODE_155369_length_233_cov_2.478947_g153079_i0 PRJNA753151 155369 233 2.478947 5.77594651 Vitis vinifera 29760 Plants Plants 52.8 0.021   NTclustered gi|147857897|emb|AM433422.2| 29760 g153079 i0 100 0.120171673819742 28 0 12 0 10 37 3899 3872 Vitis vinifera contig VV78X199170.15, whole genome shotgun sequence blastn 28 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Vitales Vitaceae Vitis Vitis vinifera
10934679 10934679 PRJNA753151_S_NODE_37429_length_401_cov_5.974860_g35187_i0 PRJNA753151 37429 401 5.97486 23.9591886 Arabidopsis thaliana 3702 Plants Plants 54.7 0.011   NTclustered gi|1862939915|emb|LR797790.1| 3702 g35187 i0 96.875 0.239401496259352 32 1 8 0 206 237 7489769 7489738 Arabidopsis thaliana genome assembly, chromosome: 4 blastn 96 54.7 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Brassicales Brassicaceae Arabidopsis Arabidopsis thaliana
11405648 11405648 PRJNA753151_S_NODE_101469_length_281_cov_2.714286_g99179_i0 PRJNA753151 101469 281 2.714286 7.62714366 Eukaryota 2759 Plants Plants 520 5.909999999999999e-143   NTclustered gi|1878849207|gb|MT796543.1| 3512 g99179 i0 100 100 281 0 100 0 1 281 1991 1711 Quercus rubra isolate DM598 small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 28100 520 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fagales Fagaceae Quercus Quercus rubra
12210329 12210329 PRJNA753151_S_NODE_85250_length_301_cov_2.255814_g82960_i0 PRJNA753151 85250 301 2.255814 6.79000014 Lolium rigidum 89674 Plants Plants 326 1.4899999999999999e-84   NTclustered gi|2212576889|ref|XM_047215120.1| 89674 g82960 i0 92.017 2.02990033222591 238 10 93 5 1 233 571 804 PREDICTED: Lolium rigidum protein C2-DOMAIN ABA-RELATED 3-like (LOC124679347), mRNA blastn 611 326 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Lolium Lolium rigidum
12681582 12681582 PRJNA753151_S_NODE_307950_length_157_cov_1.973684_g305660_i0 PRJNA753151 307950 157 1.973684 3.09868388 Quercus 3511 Plants Plants 268 1.1799999999999998e-67   NTclustered gi|2293118334|ref|XM_050431716.1| 38942 g305660 i0 97.452 3 157 4 100 0 1 157 1426 1270 PREDICTED: Quercus robur glycolate oxidase-like (LOC126726455), transcript variant X2, mRNA blastn 471 268 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fagales Fagaceae Quercus Quercus robur
13955829 13955829 PRJNA753151_S_NODE_163511_length_227_cov_3.005435_g161221_i0 PRJNA753151 163511 227 3.005435 6.82233745 Juglans 16718 Plants Plants 420 4.81e-113   NTclustered gi|1882581482|ref|XR_004799456.1| 51240 g161221 i0 100 99.2863436123348 227 0 100 0 1 227 576 350 PREDICTED: Juglans regia 28S ribosomal RNA (LOC118346048), rRNA blastn 22538 420 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fagales Juglandaceae Juglans Juglans regia
16033492 16033492 PRJNA753151_S_NODE_89973_length_295_cov_2.269841_g87683_i0 PRJNA753151 89973 295 2.269841 6.69603095 Lolium rigidum 89674 Plants Plants 425 1.3999999999999999e-114   NTclustered gi|2212477921|ref|XM_047222071.1| 89674 g87683 i0 95.522 5.53220338983051 268 9 91 1 28 295 1056 792 PREDICTED: Lolium rigidum bHLH transcription factor RHL1-like (LOC124688384), mRNA blastn 1632 425 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Lolium Lolium rigidum
17307836 17307836 PRJNA753151_S_NODE_185334_length_213_cov_1.852941_g183044_i0 PRJNA753151 185334 213 1.852941 3.94676433 Vitis vinifera 29760 Plants Plants 374 3.519999999999999e-99   NTclustered gi|123705883|emb|AM474827.1| 29760 g183044 i0 97.674 2 215 3 100 2 1 213 1638 1852 Vitis vinifera contig VV78X244786.7, whole genome shotgun sequence blastn 426 374 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Vitales Vitaceae Vitis Vitis vinifera
17308210 17308210 PRJNA753151_S_NODE_245534_length_181_cov_1.956522_g243244_i0 PRJNA753151 245534 181 1.956522 3.54130482 Rosa rugosa 74645 Plants Plants 52.8 0.015   NTclustered gi|2646219042|ref|XM_062134750.1| 74645 g243244 i0 100 0.154696132596685 28 0 15 0 77 104 114 87 PREDICTED: Rosa rugosa heat stress transcription factor A-5 (LOC133709118), mRNA blastn 28 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Rosaceae Rosa Rosa rugosa
17779564 17779564 PRJNA753151_S_NODE_136574_length_247_cov_10.926471_g134284_i0 PRJNA753151 136574 247 10.926471 26.98838337 Quercus 3511 Plants Plants 451 1.88e-122   NTclustered gi|1878849207|gb|MT796543.1| 3512 g134284 i0 99.595 100 247 1 100 0 1 247 3504 3750 Quercus rubra isolate DM598 small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 24700 451 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fagales Fagaceae Quercus Quercus rubra
18582306 18582306 PRJNA753151_S_NODE_300275_length_160_cov_1.153846_g297985_i0 PRJNA753151 300275 160 1.153846 1.8461536 Trichophorum cespitosum 76515 Plants Plants 54.7 0.004   NTclustered gi|2919516674|emb|OZ238286.1| 76515 g297985 i0 92.105 0.475 38 3 24 0 60 97 1979365 1979328 Trichophorum cespitosum genome assembly, chromosome: 18 blastn 76 54.7 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Cyperaceae Trichophorum Trichophorum cespitosum
19857029 19857029 PRJNA753151_S_NODE_233776_length_186_cov_6.825175_g231486_i0 PRJNA753151 233776 186 6.825175 12.6948255 Brassica rapa 3711 Plants Plants 52.8 0.016   NTclustered gi|1516534800|emb|LR031575.1| 3711 g231486 i0 100 0.150537634408602 28 0 15 0 86 113 14587265 14587292 Brassica rapa genome, scaffold: A08 blastn 28 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Brassicales Brassicaceae Brassica Brassica rapa
21132564 21132564 PRJNA753151_S_NODE_223297_length_192_cov_1.208054_g221007_i0 PRJNA753151 223297 192 1.208054 2.31946368 Quercus lobata 97700 Plants Plants 329 6.82e-86   NTclustered gi|1757503764|ref|XM_031101365.1| 97700 g221007 i0 97.906 1.60416666666667 191 2 99 1 2 192 1081 893 PREDICTED: Quercus lobata 60S ribosomal protein L10a-like (LOC115979342), mRNA blastn 308 329 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fagales Fagaceae Quercus Quercus lobata
22406901 22406901 PRJNA753151_S_NODE_132598_length_251_cov_2.062500_g130308_i0 PRJNA753151 132598 251 2.0625 5.176875 Ricinus communis 3988 Plants Plants 141 4.72e-29   NTclustered gi|2241037345|ref|XM_002517453.4| 3988 g130308 i0 80 8.91235059760956 200 32 78 7 37 232 465 270 PREDICTED: Ricinus communis 60S ribosomal protein L30 (LOC8276054), mRNA blastn 2237 141 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Malpighiales Euphorbiaceae Ricinus Ricinus communis
23682354 23682354 PRJNA753151_S_NODE_110179_length_272_cov_1.572052_g107889_i0 PRJNA753151 110179 272 1.572052 4.27598144 Pinus taeda 3352 Plants Plants 259 1.37e-64   NTclustered gi|203385768|gb|FJ139188.1| 3352 g107889 i0 95.181 3.45955882352941 166 5 60 1 1 163 166 1 Pinus taeda isolate 7194 anonymous locus CL389Contig1_03 genomic sequence blastn 941 259 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Pinales Pinaceae Pinus Pinus taeda

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;