RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA753151" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 4 ✖

bioproject 1

  • PRJNA753151 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2005693 2005693 PRJNA753151_S_NODE_167262_length_225_cov_0.879121_g164972_i0 PRJNA753151 167262 225 0.879121 1.97802225 Betaretrovirus murmamtum 3427295 Viruses Viruses 394 2.89e-105   NTclustered gi|303686|dbj|D16249.1|MMTPROVR 11757 g164972 i0 98.222 36.6355555555556 225 4 100 0 1 225 893 669 Mouse mammary tumor virus proviral DNA (from Mus musculus mammary gland) for gag-protease-pol polyprotein and env protein, complete cds blastn 8243 394 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus murmamtum
10933383 10933383 PRJNA753151_S_NODE_12049_length_610_cov_98.978836_g772_i4 PRJNA753151 12049 610 98.978836 603.7708996 Gammaretrovirus murleu 3428959 Viruses Viruses 1020 0   NTclustered gi|332038|gb|K01204.1|MLVGPB 11786 g772 i4 97.181 98.5049180327869 603 17 99 0 8 610 885 283 Murine leukemia virus B-tropic strain WN1802B gag-pol region blastn 60088 1020 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
13484670 13484670 PRJNA753151_S_NODE_891_length_1874_cov_59.160022_g772_i1 PRJNA753151 891 1874 59.160022 1108.65881228 Gammaretrovirus murleu 3428959 Viruses Viruses 3188 0   NTclustered gi|1167936820|gb|KY574514.1| 11786 g772 i1 97.483 98.1686232657417 1867 47 99 0 1 1867 299 2165 Murine leukemia virus isolate CB208, complete genome blastn 183968 3188 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
21132117 21132117 PRJNA753151_S_NODE_14437_length_570_cov_3.766603_g12553_i0 PRJNA753151 14437 570 3.766603 21.4696371 Gammaretrovirus murleu 3428959 Viruses Viruses 843 0   NTclustered gi|1167936654|gb|KY574507.1| 11786 g12553 i0 95.954 97.780701754386 519 21 99 0 1 519 5410 5928 Murine leukemia virus isolate Akv1-C44-1, complete genome blastn 55735 843 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;