RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA753151" and tax_clade = "Sar"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

bioproject 1

  • PRJNA753151 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12681575 12681575 PRJNA753151_S_NODE_287110_length_164_cov_3.090909_g284820_i0 PRJNA753151 287110 164 3.090909 5.06909076 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 303 3.42e-78   NTclustered gi|291495599|gb|GU823226.1| 152704 g284820 i0 100 100 164 0 100 0 1 164 386 549 Uncultured stramenopile clone BCA5F13RJ3F09 18S ribosomal RNA gene, partial sequence blastn 16400 303 1 Eukaryota Sar             uncultured stramenopile
18582431 18582431 PRJNA753151_S_NODE_321595_length_153_cov_1.227273_g319305_i0 PRJNA753151 321595 153 1.227273 1.87772769 Colponema vietnamica 1492817 SAR_Eukaryotes SAR_Eukaryotes 174 2.56e-39   NTclustered gi|677286262|gb|KF997852.1| 1492817 g319305 i0 93.22 71.1764705882353 118 8 77 0 28 145 1352 1235 Colponema vietnamica from Viet Nam translation elongation factor 1-alpha (EF1A) mRNA, complete cds blastn 10890 174 1 Eukaryota Sar       Colponemida Colponemidia Colponema Colponema vietnamica
19856857 19856857 PRJNA753151_S_NODE_2036_length_1236_cov_14.278290_g1674_i0 PRJNA753151 2036 1236 14.27829 176.4796644 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.035   NTclustered gi|829186935|ref|XM_001022570.3| 312017 g1674 i0 100 0.023462783171521 29 0 2 0 318 346 1636 1608 Tetrahymena thermophila SB210 Serine/Threonine kinase domain protein partial mRNA blastn 29 54.7 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;