RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA753112" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA753112 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7579578 7579578 PRJNA753112_P_NODE_26246_length_266_cov_1.424870_g25904_i0 PRJNA753112 26246 266 1.42487 3.7901542 Pseudomonadati 3379134 Bacteria Bacteria 187 6.389999999999998e-43   NTclustered gi|2621702829|emb|OY761823.1| 2035858 g25904 i0 81.659 21.4812030075188 229 38 85 4 32 258 3117289 3117515 MAG: uncultured Pseudodesulfovibrio sp. isolate 71fa3a25-14da-4668-b662-1cbcee8d8297 genome assembly, chromosome: 1 blastn 5714 187 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Pseudodesulfovibrio uncultured Pseudodesulfovibrio sp.
17306883 17306883 PRJNA753112_P_NODE_13054_length_375_cov_10.059603_g12712_i0 PRJNA753112 13054 375 10.059603 37.72351125 uncultured Desulfobacterium sp. 201089 Bacteria Bacteria 126 2.07e-24   NTclustered gi|2814788371|emb|OY764894.2| 201089 g12712 i0 83.942 38.04 137 17 36 4 15 148 602522 602656 MAG: uncultured Desulfobacterium sp. isolate 35125921-b51f-40db-957b-bccbeeb29ead genome assembly, chromosome: 1 blastn 14265 126 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteriaceae Desulfobacterium uncultured Desulfobacterium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;