RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

12 rows where analysis = "blastn", bioproject = "PRJNA753112" and tax_phylum = "Ciliophora"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 12 ✖

tax_clade 1

bioproject 1

  • PRJNA753112 · 12 ✖

analysis 1

  • blastn · 12 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2004842 2004842 PRJNA753112_P_NODE_1382_length_1187_cov_5.905745_g1165_i0 PRJNA753112 1382 1187 5.905745 70.10119315 Chilodonella piscicola 1654720 SAR_Eukaryotes SAR_Eukaryotes 1125 0   NTclustered gi|1389870231|gb|MH356268.1| 1654720 g1165 i0 88.665 21.2257792754844 944 79 78 21 259 1187 1 931 Chilodonella piscicola strain PR small subunit ribosomal RNA gene, partial sequence; mitochondrial blastn 25195 1125 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
9657250 9657250 PRJNA753112_P_NODE_1128_length_1334_cov_3.076130_g937_i0 PRJNA753112 1128 1334 3.07613 41.0355742 Chilodonella uncinata 151077 SAR_Eukaryotes SAR_Eukaryotes 1927 0   NTclustered gi|110645063|gb|DQ665311.1| 151077 g937 i0 95.522 38.328335832084 1206 52 90 2 48 1252 1 1205 Chilodonella uncinata clone 1 elongation factor 1-alpha (EF-1alpha) gene, partial cds; macronuclear blastn 51130 1927 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella uncinata
11405515 11405515 PRJNA753112_P_NODE_3269_length_756_cov_15.693997_g2952_i0 PRJNA753112 3269 756 15.693997 118.64661732 Helicoprorodontidae 1607782 SAR_Eukaryotes SAR_Eukaryotes 137 2.03e-27   NTclustered gi|375305434|gb|JF975394.1| 652932 g2952 i0 90.385 15.0066137566138 104 10 18 0 293 396 206 309 Trachelotractus entzi isolate LWW07033111 28S ribosomal RNA gene, partial sequence blastn 11345 137 1 Eukaryota Sar   Ciliophora Litostomatea Haptorida   Trachelotractus Trachelotractus entzi
12208758 12208758 PRJNA753112_P_NODE_9910_length_431_cov_2.122905_g9568_i0 PRJNA753112 9910 431 2.122905 9.14972055 Chilodonella uncinata 151077 SAR_Eukaryotes SAR_Eukaryotes 568 3.34e-157   NTclustered gi|110277428|gb|DQ662856.1| 151077 g9568 i0 90.465 26.5638051044084 430 41 99 0 2 431 290 719 Chilodonella uncinata heat shock protein 90 gene, partial cds; macronuclear blastn 11449 568 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella uncinata
15230083 15230083 PRJNA753112_P_NODE_18772_length_313_cov_2.537500_g18430_i0 PRJNA753112 18772 313 2.5375 7.942375 Chilodonella 151076 SAR_Eukaryotes SAR_Eukaryotes 553 6.579999999999998e-153   NTclustered gi|13194559|gb|AF300281.1|AF300281 151077 g18430 i0 98.413 98.1182108626198 315 3 100 1 1 313 319 5 Chilodonella uncinata clone 1 18S small subunit ribosomal RNA gene, partial sequence blastn 30711 558 0.991039426523297 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella uncinata
16031861 16031861 PRJNA753112_P_NODE_4833_length_621_cov_1.846715_g4497_i0 PRJNA753112 4833 621 1.846715 11.46810015 Chilodonella uncinata 151077 SAR_Eukaryotes SAR_Eukaryotes 876 0   NTclustered gi|110277428|gb|DQ662856.1| 151077 g4497 i0 92.11 94.5024154589372 621 49 100 0 1 621 1512 892 Chilodonella uncinata heat shock protein 90 gene, partial cds; macronuclear blastn 58686 876 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella uncinata
19856164 19856164 PRJNA753112_P_NODE_3156_length_771_cov_7.598854_g2842_i0 PRJNA753112 3156 771 7.598854 58.58716434 Chilodonella hexasticha 1938391 SAR_Eukaryotes SAR_Eukaryotes 1319 0   NTclustered gi|1389430803|gb|MH341631.1| 1938391 g2842 i0 97.539 52.5849546044099 772 17 100 2 1 771 1506 2276 Chilodonella hexasticha strain C. hexasticha SC large subunit ribosomal RNA gene, partial sequence blastn 40543 1319 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella hexasticha
21603583 21603583 PRJNA753112_P_NODE_10457_length_419_cov_17.684971_g10115_i0 PRJNA753112 10457 419 17.684971 74.10002849 Chilodonella 151076 SAR_Eukaryotes SAR_Eukaryotes 344 5.94e-90   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g10115 i0 98.462 51.9355608591885 195 3 47 0 1 195 2888 3082 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 21761 344 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
22406171 22406171 PRJNA753112_P_NODE_11118_length_407_cov_1.634731_g10776_i0 PRJNA753112 11118 407 1.634731 6.65335517 Chilodonella uncinata 151077 SAR_Eukaryotes SAR_Eukaryotes 525 1.9099999999999998e-144   NTclustered gi|300521444|gb|GQ377690.1| 151077 g10776 i0 90.099 11.8108108108108 404 40 99 0 1 404 510 913 Chilodonella uncinata 14-3-3 protein-like mRNA, partial sequence blastn 4807 525 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella uncinata
24955425 24955425 PRJNA753112_P_NODE_18340_length_317_cov_0.959016_g17998_i0 PRJNA753112 18340 317 0.959016 3.04008072 Chilodonella uncinata 151077 SAR_Eukaryotes SAR_Eukaryotes 475 1.49e-129   NTclustered gi|300521444|gb|GQ377690.1| 151077 g17998 i0 93.691 1.09148264984227 317 20 100 0 1 317 487 171 Chilodonella uncinata 14-3-3 protein-like mRNA, partial sequence blastn 346 475 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella uncinata
24955482 24955482 PRJNA753112_P_NODE_21500_length_293_cov_1.418182_g21158_i0 PRJNA753112 21500 293 1.418182 4.15527326 Chilodonella uncinata 151077 SAR_Eukaryotes SAR_Eukaryotes 420 6.469999999999998e-113   NTclustered gi|300676719|gb|GQ377693.1| 151077 g21158 i0 92.491 12.7815699658703 293 22 100 0 1 293 406 114 Chilodonella uncinata gcr5-like mRNA, partial sequence blastn 3745 420 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella uncinata
25428149 25428149 PRJNA753112_P_NODE_16260_length_336_cov_4.152091_g15918_i0 PRJNA753112 16260 336 4.152091 13.95102576 Chilodonella 151076 SAR_Eukaryotes SAR_Eukaryotes 599 9.029999999999998e-167   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g15918 i0 98.81 102.080357142857 336 4 100 0 1 336 2693 2358 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 34299 599 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;