RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA753112" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 4 ✖

bioproject 1

  • PRJNA753112 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1201653 1201653 PRJNA753112_P_NODE_29561_length_251_cov_0.876404_g29219_i0 PRJNA753112 29561 251 0.876404 2.19977404 Deinococcus 1298 Bacteria Bacteria 464 2.47e-126   NTclustered gi|2264081587|gb|CP094462.1| 1299 g29219 i0 100 132.147410358566 251 0 100 0 1 251 920263 920013 Deinococcus radiodurans strain BRD125 chromosome 1, complete sequence blastn 33169 464 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus radiodurans
2005204 2005204 PRJNA753112_P_NODE_33282_length_243_cov_0.917647_g32940_i0 PRJNA753112 33282 243 0.917647 2.22988221 Deinococcus actinosclerus 1768108 Bacteria Bacteria 433 6.69e-117   NTclustered gi|972944657|gb|CP013910.1| 1768108 g32940 i0 98.765 67.4197530864197 243 3 100 0 1 243 1122520 1122278 Deinococcus actinosclerus strain BM2 chromosome, complete genome blastn 16383 433 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus actinosclerus
5832574 5832574 PRJNA753112_P_NODE_23785_length_279_cov_2.000000_g23443_i0 PRJNA753112 23785 279 2 5.58 Deinococcus actinosclerus 1768108 Bacteria Bacteria 516 7.58e-142   NTclustered gi|972944657|gb|CP013910.1| 1768108 g23443 i0 100 198.670250896057 279 0 100 0 1 279 76101 75823 Deinococcus actinosclerus strain BM2 chromosome, complete genome blastn 55429 516 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus actinosclerus
23681937 23681937 PRJNA753112_P_NODE_22859_length_285_cov_1.245283_g22517_i0 PRJNA753112 22859 285 1.245283 3.54905655 Deinococcus grandis 57498 Bacteria Bacteria 488 1.6899999999999999e-133   NTclustered gi|1751871007|dbj|AP021849.1| 57498 g22517 i0 97.544 32.1859649122807 285 7 100 0 1 285 426560 426844 Deinococcus grandis ATCC 43672 DNA, complete genome blastn 9173 488 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus grandis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;