RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA753112" and tax_kingdom = "Fungi"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Fungi · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA753112 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8382410 8382410 PRJNA753112_P_NODE_30527_length_249_cov_0.886364_g30185_i0 PRJNA753112 30527 249 0.886364 2.20704636 uncultured fungus 175245 Fungi Fungi 375 1.18e-99   NTclustered gi|2159200445|emb|OU939076.1| 175245 g30185 i0 93.952 99.6787148594377 248 15 99 0 2 249 921 674 uncultured fungus genomic DNA sequence contains 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2, 28S rRNA gene, isolate consensus00371 blastn 24820 375 1 Eukaryota Opisthokonta Fungi           uncultured fungus
10933215 10933215 PRJNA753112_P_NODE_5569_length_578_cov_4.958416_g5230_i0 PRJNA753112 5569 578 4.958416 28.65964448 uncultured Ascomycota 175243 Fungi Fungi 856 0   NTclustered gi|313483124|gb|HQ433129.1| 175243 g5230 i0 95.064 100.384083044983 547 21 94 6 36 578 836 292 Uncultured Ascomycota clone asc07192 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 58022 856 1 Eukaryota Opisthokonta Fungi Ascomycota         uncultured Ascomycota
16031641 16031641 PRJNA753112_P_NODE_25713_length_269_cov_1.387755_g25371_i0 PRJNA753112 25713 269 1.387755 3.73306095 Daldinia decipiens 326647 Fungi Fungi 54.7 0.007   NTclustered gi|2272156782|ref|XM_049239457.1| 326647 g25371 i0 100 0.315985130111524 29 0 11 0 121 149 331 359 Daldinia decipiens Aldo/keto reductase (F4813DRAFT_193046), mRNA blastn 85 54.7 1 Eukaryota Opisthokonta Fungi Ascomycota Sordariomycetes Xylariales Hypoxylaceae Daldinia Daldinia decipiens
17779355 17779355 PRJNA753112_P_NODE_24774_length_274_cov_1.189055_g24432_i0 PRJNA753112 24774 274 1.189055 3.2580107 Ascomycota 4890 Fungi Fungi 496 9.67e-136   NTclustered gi|1758161116|gb|MN543960.1| 5081 g24432 i0 99.27 99.4124087591241 274 2 100 0 1 274 529 802 Penicillium sp. isolate CLE107 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 27239 501 0.99001996007984 Eukaryota Opisthokonta Fungi Ascomycota Eurotiomycetes Eurotiales Aspergillaceae Penicillium Penicillium sp.
19053367 19053367 PRJNA753112_P_NODE_27355_length_260_cov_1.454545_g27013_i0 PRJNA753112 27355 260 1.454545 3.781817 Cladosporium 5498 Fungi Fungi 481 2.55e-131   NTclustered gi|283827952|gb|EU019262.2| 29917 g27013 i0 100 80.5115384615385 260 0 100 0 1 260 3275 3016 Cladosporium cladosporioides strain CBS 109.21 28S large subunit ribosomal RNA gene, partial sequence blastn 20933 481 1 Eukaryota Opisthokonta Fungi Ascomycota Dothideomycetes Cladosporiales Cladosporiaceae Cladosporium Cladosporium cladosporioides
20328177 20328177 PRJNA753112_P_NODE_32756_length_244_cov_0.912281_g32414_i0 PRJNA753112 32756 244 0.912281 2.22596564 Dothideomycetes 147541 Fungi Fungi 451 1.86e-122   NTclustered gi|910265363|gb|KT309625.1| 5454 g32414 i0 100 100 244 0 100 0 1 244 267 24 Didymella rabiei culture-collection ICMP:10299 28S ribosomal RNA gene, partial sequence blastn 24400 451 1 Eukaryota Opisthokonta Fungi Ascomycota Dothideomycetes Pleosporales Didymellaceae Ascochyta Ascochyta rabiei
22879137 22879137 PRJNA753112_P_NODE_20838_length_297_cov_3.107143_g20496_i0 PRJNA753112 20838 297 3.107143 9.22821471 Malassezia 55193 Fungi Fungi 547 2.8899999999999992e-151   NTclustered gi|724086716|gb|KM269140.1| 76773 g20496 i0 100 99.1178451178451 296 0 99 0 2 297 1203 908 Malassezia globosa strain 123.1 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 29438 547 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia globosa

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;