RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA753112" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 3 ✖

bioproject 1

  • PRJNA753112 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3280140 3280140 PRJNA753112_P_NODE_15263_length_347_cov_12.937956_g14921_i0 PRJNA753112 15263 347 12.937956 44.89470732 Parafumarolamoeba stagnalis 2872509 Heterolobosea other_Eukaryota 636 7.13e-178   NTclustered gi|2086087549|gb|MZ919148.1| 2872509 g14921 i0 99.712 7.81844380403458 347 1 100 0 1 347 654 1000 Parafumarolamoeba stagnalis small subunit ribosomal RNA gene, partial sequence blastn 2713 636 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Parafumarolamoeba Parafumarolamoeba stagnalis
6305612 6305612 PRJNA753112_P_NODE_22885_length_284_cov_1344.957346_g22543_i0 PRJNA753112 22885 284 1344.957346 3819.67886264 root 1 Root_unresolved Root_unresolved 97.1 1.19e-15   NTclustered gi|2031939189|emb|OD957502.1| 5763 g22543 i0 100 18.6478873239437 52 0 18 0 1 52 246 297 Naegleria fowleri Karachi_NF001 strain blastn 5296 97.1 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
9657739 9657739 PRJNA753112_P_NODE_5548_length_579_cov_4.260870_g5209_i0 PRJNA753112 5548 579 4.26087 24.6704373 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 331 6.56e-86   NTclustered gi|2651357784|gb|PP174299.1| 1874883 g5209 i0 88.686 32.2487046632124 274 27 69 4 200 470 3195 2923 Allovahlkampfia sp. isolate S28D2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 18672 331 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;