RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA752572" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 5 ✖

bioproject 1

  • PRJNA752572 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
728560 728560 PRJNA752572_P_NODE_158861_length_212_cov_1.751412_g158354_i0 PRJNA752572 158861 212 1.751412 3.71299344 Dolerus tritici iflavirus 1 3350209 Viruses Viruses 58.4 4.01e-4   NTclustered gi|2833733277|gb|PQ323359.2| 3350209 g158354 i0 100 0.679245283018868 31 0 15 0 1 31 56 86 Dolerus tritici iflavirus 1 isolate HN-WS polyprotein gene, complete cds blastn 144 58.4 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Iflaviridae Iflavirus Dolerus tritici iflavirus 1
2004641 2004641 PRJNA752572_P_NODE_235622_length_173_cov_0.956522_g235115_i0 PRJNA752572 235622 173 0.956522 1.65478306 Caudoviricetes sp. 2832643 Viruses Viruses 169 1.38e-37   NTclustered gi|2914840859|gb|OR222850.1| 2832643 g235115 i0 93.805 1.11560693641618 113 6 100 1 61 173 38388 38277 MAG: Caudoviricetes sp. isolate MSP0504 genomic sequence blastn 193 169 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
2004650 2004650 PRJNA752572_P_NODE_250922_length_168_cov_2.157895_g250415_i0 PRJNA752572 250922 168 2.157895 3.6252636 Gammapapillomavirus 1 333926 Viruses Viruses 311 2.11e-80   NTclustered gi|1878296596|gb|MN605989.1| 10617 g250415 i0 100 5.70238095238095 168 0 100 0 1 168 3554 3387 Human papillomavirus 4 isolate P2, complete genome blastn 958 311 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Gammapapillomavirus Gammapapillomavirus 1
22405999 22405999 PRJNA752572_P_NODE_246318_length_170_cov_0.977778_g245811_i0 PRJNA752572 246318 170 0.977778 1.6622226 Caudoviricetes sp. 2832643 Viruses Viruses 292 7.69e-75   NTclustered gi|2914810319|gb|OR221740.1| 2832643 g245811 i0 97.647 3 170 4 100 0 1 170 14868 15037 MAG: Caudoviricetes sp. isolate MSP1300 genomic sequence blastn 510 292 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
23681571 23681571 PRJNA752572_P_NODE_261079_length_166_cov_1.007634_g260572_i0 PRJNA752572 261079 166 1.007634 1.67267244 Maltschvirus maltsch 2956182 Viruses Viruses 135 1.34e-27   NTclustered gi|1862940772|emb|LR797824.1| 2100421 g260572 i0 83.117 5.19277108433735 154 21 92 4 5 157 130044 130193 uncultured Caudovirales phage genome assembly blastn 862 135 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes   Peduoviridae Maltschvirus Maltschvirus maltsch

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;