RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA752572" and tax_phylum = "Porifera"

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tax_superkingdom 1

tax_phylum 1

  • Porifera · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA752572 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14757456 14757456 PRJNA752572_P_NODE_120432_length_245_cov_1.595238_g119925_i0 PRJNA752572 120432 245 1.595238 3.9083331 Halichondria panicea 6063 Porifera other_Eukaryota 198 2.68e-46   NTclustered gi|2719055538|ref|XM_064535782.1| 6063 g119925 i0 81.224 19.0897959183673 245 46 100 0 1 245 4584 4828 PREDICTED: Halichondria panicea pre-mRNA-processing-splicing factor 8 (LOC135339628), transcript variant X2, mRNA blastn 4677 198 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Suberitida Halichondriidae Halichondria Halichondria panicea
19855742 19855742 PRJNA752572_P_NODE_92756_length_281_cov_2.048780_g92249_i0 PRJNA752572 92756 281 2.04878 5.7570718 Sycon ciliatum 27933 Porifera other_Eukaryota 93.5 1.53e-14   NTclustered gi|2732926886|ref|XM_065330466.1| 27933 g92249 i0 79.259 8.41637010676157 135 26 48 2 96 229 629 496 PREDICTED: Sycon ciliatum large ribosomal subunit protein uL6-like (LOC135817306), mRNA blastn 2365 93.5 1 Eukaryota Opisthokonta Metazoa Porifera Calcarea Leucosolenida Sycettidae Sycon Sycon ciliatum
24955128 24955128 PRJNA752572_P_NODE_169500_length_205_cov_1.835294_g168993_i0 PRJNA752572 169500 205 1.835294 3.7623527 Dysidea avara 196820 Porifera other_Eukaryota 56.5 0.001   NTclustered gi|2749574204|ref|XM_066053419.1| 196820 g168993 i0 80.519 0.673170731707317 77 12 36 1 99 172 663 739 PREDICTED: Dysidea avara uncharacterized protein (LOC136259864), mRNA blastn 138 56.5 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Dictyoceratida Dysideidae Dysidea Dysidea avara

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;