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contig_metadata

16 rows where analysis = "blastn", bioproject = "PRJNA752572" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 16 ✖

tax_clade 1

bioproject 1

  • PRJNA752572 · 16 ✖

analysis 1

  • blastn · 16 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2476739 2476739 PRJNA752572_P_NODE_270422_length_163_cov_2.148438_g269915_i0 PRJNA752572 270422 163 2.148438 3.50195394 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 224 2.72e-54   NTclustered gi|1233048122|gb|KX252489.1| 89336 g269915 i0 91.411 100 163 14 100 0 1 163 49 211 Phytophthora sp. isolate 38D9(authentic) beta-tubulin gene, partial cds blastn 16300 226 0.991150442477876 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sp.
3279891 3279891 PRJNA752572_P_NODE_110443_length_256_cov_2.972851_g109936_i0 PRJNA752572 110443 256 2.972851 7.61049856 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 152 2.2299999999999998e-32   NTclustered gi|2795038730|ref|XM_067938895.1| 4785 g109936 i0 83.636 19.69921875 165 23 64 4 37 199 213 51 Phytophthora cinnamomi ADP-ribosylation factor-like protein 3 (IUM83_14170), partial mRNA blastn 5043 152 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
3279931 3279931 PRJNA752572_P_NODE_209803_length_183_cov_2.439189_g209296_i0 PRJNA752572 209803 183 2.439189 4.46371587 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 69.4 1.55e-7   NTclustered gi|166043101|emb|CU357747.1| 100861 g209296 i0 97.5 0.879781420765027 40 1 22 0 144 183 876 837 Aphanomyces euteiches cDNA blastn 161 69.4 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
4556968 4556968 PRJNA752572_P_NODE_141784_length_225_cov_1.494737_g141277_i0 PRJNA752572 141784 225 1.494737 3.36315825 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 121 5.409999999999999e-23   NTclustered gi|695396134|ref|XM_009523071.1| 67593 g141277 i0 78.283 2.46666666666667 198 36 87 5 1 196 290 482 Phytophthora sojae hypothetical protein mRNA blastn 555 121 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
5029671 5029671 PRJNA752572_P_NODE_31684_length_485_cov_2.433333_g31193_i0 PRJNA752572 31684 485 2.433333 11.80166505 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 442 2.3999999999999998e-119   NTclustered gi|1036393066|gb|KU682611.1| 1861850 g31193 i0 83.299 98.8226804123711 479 80 99 0 1 479 183 661 Phytophthora sp. x Kunnunara-like isolate TW338 cytochrome oxidase subunit I (coxI) gene, partial cds; mitochondrial blastn 47929 442 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sp. x Kunnunara-like
8381851 8381851 PRJNA752572_P_NODE_118367_length_247_cov_2.056604_g117860_i0 PRJNA752572 118367 247 2.056604 5.07981188 Phytophthora sp. 89336 SAR_Eukaryotes SAR_Eukaryotes 268 2.04e-67   NTclustered gi|1233049813|gb|KX251484.1| 89336 g117860 i0 87.826 93.2348178137652 230 24 92 4 20 247 1210 1437 Phytophthora sp. isolate 48H2(authentic) heat shock protein 90 gene, partial cds blastn 23029 268 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sp.
9657065 9657065 PRJNA752572_P_NODE_199928_length_188_cov_1.823529_g199421_i0 PRJNA752572 199928 188 1.823529 3.42823452 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 145 2.58e-30   NTclustered gi|669165645|ref|XM_008620163.1| 1156394 g199421 i0 83.766 3.6063829787234 154 23 81 2 6 158 257 105 Saprolegnia diclina VS20 caltractin mRNA blastn 678 145 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
9657149 9657149 PRJNA752572_P_NODE_7928_length_895_cov_3.026744_g7634_i0 PRJNA752572 7928 895 3.026744 27.0893588 Phytophthora humicola 129352 SAR_Eukaryotes SAR_Eukaryotes 486 2.0899999999999994e-132   NTclustered gi|2314988859|ref|NC_067071.1| 129352 g7634 i0 79.883 69.604469273743 686 121 76 16 215 893 1447 772 Phytophthora humicola voucher P3826 mitochondrion, complete genome blastn 62296 486 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora humicola
12208078 12208078 PRJNA752572_P_NODE_261390_length_166_cov_1.007634_g260883_i0 PRJNA752572 261390 166 1.007634 1.67267244 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 104 3.78e-18   NTclustered gi|813103042|ref|XM_012338618.1| 695850 g260883 i0 85.714 2.25301204819277 98 14 59 0 49 146 618 715 Saprolegnia parasitica CBS 223.65 hypothetical protein partial mRNA blastn 374 104 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
15229911 15229911 PRJNA752572_P_NODE_105512_length_263_cov_1.030702_g105005_i0 PRJNA752572 105512 263 1.030702 2.71074626 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 311 3.59e-80   NTclustered gi|156987037|gb|EU080541.1| 4793 g105005 i0 90.336 90.6273764258555 238 21 90 2 1 237 784 1020 Phytophthora citrophthora isolate PD_00041(P6310) heat shock protein 90 (HSP90) gene, partial cds blastn 23835 311 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora citrophthora
18580403 18580403 PRJNA752572_P_NODE_251315_length_168_cov_1.819549_g250808_i0 PRJNA752572 251315 168 1.819549 3.05684232 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 128 2.28e-25   NTclustered gi|695423047|ref|XM_009530291.1| 67593 g250808 i0 82.639 27.9642857142857 144 25 86 0 10 153 1076 1219 Phytophthora sojae hypothetical protein partial mRNA blastn 4698 128 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
19855660 19855660 PRJNA752572_P_NODE_16796_length_652_cov_2.478120_g16377_i0 PRJNA752572 16796 652 2.47812 16.1573424 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 431 7.13e-116   NTclustered gi|1111669722|ref|NC_032051.1| 112090 g16377 i0 81.374 76.5751533742331 553 82 83 15 47 587 1929 2472 Aphanomyces astaci isolate AP03 mitochondrion, complete genome blastn 49927 431 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
20327843 20327843 PRJNA752572_P_NODE_47416_length_397_cov_2.513812_g46911_i0 PRJNA752572 47416 397 2.513812 9.97983364 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 58.4 8.17e-4   NTclustered gi|2794880233|ref|XM_067890569.1| 164328 g46911 i0 97.143 3.32241813602015 35 0 9 1 26 59 211 177 Phytophthora ramorum Translation machinery-associated protein 22 (KRP23_570), partial mRNA blastn 1319 58.4 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
21131173 21131173 PRJNA752572_P_NODE_221417_length_178_cov_1.678322_g220910_i0 PRJNA752572 221417 178 1.678322 2.98741316 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 62.1 2.5e-5   NTclustered gi|2795051890|ref|XM_067940205.1| 4785 g220910 i0 94.872 0.219101123595506 39 2 22 0 124 162 837 799 Phytophthora cinnamomi U3 small nucleolar ribonucleoprotein IMP4 (IUM83_15392), partial mRNA blastn 39 62.1 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
23681558 23681558 PRJNA752572_P_NODE_245919_length_170_cov_0.977778_g245412_i0 PRJNA752572 245919 170 0.977778 1.6622226 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 122 1.0699999999999997e-23   NTclustered gi|2795024423|ref|XM_067938288.1| 4785 g245412 i0 81.366 0.947058823529412 161 20 92 7 1 156 9 164 Phytophthora cinnamomi 60S ribosomal protein (IUM83_13598), partial mRNA blastn 161 122 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
24955200 24955200 PRJNA752572_P_NODE_73820_length_317_cov_1.347518_g73313_i0 PRJNA752572 73820 317 1.347518 4.27163206 Phytophthora infestans 4787 SAR_Eukaryotes SAR_Eukaryotes 206 2.1499999999999997e-48   NTclustered gi|301107833|ref|XM_002902953.1| 403677 g73313 i0 78.683 3.75078864353312 319 60 99 7 2 316 233 547 Phytophthora infestans T30-4 40S ribosomal protein S3-3 (PITG_08959), mRNA blastn 1189 206 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;