RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA752572" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA752572 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7579302 7579302 PRJNA752572_P_NODE_159406_length_212_cov_1.118644_g158899_i0 PRJNA752572 159406 212 1.118644 2.37152528 Nematoda 6231 Nematoda Nematoda 172 1.37e-38   NTclustered gi|150982027|gb|EF634602.1| 376549 g158899 i0 81.951 30.9481132075472 205 35 96 2 9 212 178 381 Pristionchus americanus large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 6561 172 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus americanus
16031198 16031198 PRJNA752572_P_NODE_230433_length_174_cov_2.158273_g229926_i0 PRJNA752572 230433 174 2.158273 3.75539502 Fictor stercorarius 1538713 Nematoda Nematoda 62.1 2.43e-5   NTclustered gi|675118811|gb|KJ877282.1| 1538713 g229926 i0 100 6.28735632183908 33 0 19 0 110 142 1635 1603 Fictor stercorarius strain RS9003 28S ribosomal RNA gene, partial sequence blastn 1094 62.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Fictor Fictor stercorarius
24153058 24153058 PRJNA752572_P_NODE_68939_length_328_cov_1.788396_g68432_i0 PRJNA752572 68939 328 1.788396 5.86593888 Bursaphelenchus 6324 Nematoda Nematoda 54.7 0.009   NTclustered gi|270309021|dbj|AB500154.1| 6325 g68432 i0 81.159 1.13719512195122 69 11 20 2 262 328 70 2 Bursaphelenchus mucronatus genes for 26S ribosomal RNA, intergenic spacer with variation 1, 18S ribosomal RNA, partial and complete sequence blastn 373 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus mucronatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;