RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA752572" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA752572 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5832229 5832229 PRJNA752572_P_NODE_55085_length_368_cov_4.078078_g54578_i0 PRJNA752572 55085 368 4.078078 15.00732704 Labilithrix luteola 1391654 Bacteria Bacteria 54.7 0.01   NTclustered gi|913610804|gb|CP012333.1| 1391654 g54578 i0 100 0.078804347826087 29 0 8 0 133 161 9099141 9099169 Labilithrix luteola strain DSM 27648, complete genome blastn 29 54.7 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
7579323 7579323 PRJNA752572_P_NODE_74086_length_316_cov_2.416370_g73579_i0 PRJNA752572 74086 316 2.41637 7.6357292 Nannocystis 53 Bacteria Bacteria 398 3.3e-106   NTclustered gi|2244669|emb|X87286.1| 54 g73579 i0 90 192.879746835443 310 27 97 3 6 313 1045 738 N.exedens 23S rRNA gene blastn 60950 398 1 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae Nannocystis Nannocystis exedens
12681007 12681007 PRJNA752572_P_NODE_261310_length_166_cov_1.007634_g260803_i0 PRJNA752572 261310 166 1.007634 1.67267244 Myxococcus 32 Bacteria Bacteria 99 1.76e-16   NTclustered gi|2318731907|gb|CP104804.1| 34 g260803 i0 81.102 24.6686746987952 127 20 75 4 3 127 3077016 3077140 Myxococcus xanthus strain DK1050 chromosome blastn 4095 99 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus xanthus
17306681 17306681 PRJNA752572_P_NODE_168894_length_205_cov_3.864706_g168387_i0 PRJNA752572 168894 205 3.864706 7.9226473 Nannocystis punicea 2995304 Bacteria Bacteria 187 4.6999999999999985e-43   NTclustered gi|2415023655|gb|CP114040.1| 2995304 g168387 i0 89.333 259.4 150 14 73 2 1 149 7594122 7593974 Nannocystis poenicansa strain FL3 chromosome, complete genome blastn 53177 187 1 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae Nannocystis Nannocystis punicea
19855716 19855716 PRJNA752572_P_NODE_36376_length_453_cov_4.184211_g35878_i0 PRJNA752572 36376 453 4.184211 18.95447583 Anaeromyxobacter sp. K 447217 Bacteria Bacteria 302 3.95e-77   NTclustered gi|470483543|ref|NR_076598.1| 447217 g35878 i0 84.762 102.894039735099 315 32 68 16 1 307 3 309 Anaeromyxobacter sp. K strain K 23S ribosomal RNA, complete sequence blastn 46611 302 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Anaeromyxobacteraceae Anaeromyxobacter Anaeromyxobacter sp. K

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;