RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA752572" and tax_phylum = "Mucoromycota"

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tax_superkingdom 1

tax_phylum 1

  • Mucoromycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA752572 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
728626 728626 PRJNA752572_P_NODE_66261_length_334_cov_8.692308_g65754_i0 PRJNA752572 66261 334 8.692308 29.03230872 Glomus sp. Tf 2-16 262042 Fungi Fungi 422 2.08e-113   NTclustered gi|41353938|gb|AY522919.1| 262042 g65754 i0 94.505 69.3982035928144 273 15 82 0 61 333 1 273 Glomus sp. Tf 2-16 26S ribosomal RNA gene, partial sequence blastn 23179 422 1 Eukaryota Opisthokonta Fungi Mucoromycota Glomeromycetes Glomerales Glomeraceae Glomus Glomus sp. Tf 2-16
1201371 1201371 PRJNA752572_P_NODE_207921_length_184_cov_2.060403_g207414_i0 PRJNA752572 207921 184 2.060403 3.79114152 Mucoromycota 1913637 Fungi Fungi 187 4.1199999999999984e-43   NTclustered gi|2323766513|ref|XM_051583483.1| 101096 g207414 i0 85.484 160.266304347826 186 19 99 7 1 182 242 61 Gilbertella persicaria ubiquitin-60S ribosomal protein L40 (B0P05DRAFT_629030), mRNA blastn 29489 187 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Choanephoraceae Gilbertella Gilbertella persicaria
24153038 24153038 PRJNA752572_P_NODE_104799_length_263_cov_10.714912_g104292_i0 PRJNA752572 104799 263 10.714912 28.18021856 Fungi 4751 Fungi Fungi 486 5.5499999999999986e-133   NTclustered gi|658131632|emb|HF968958.1| 4874 g104292 i0 100 143.220532319392 263 0 100 0 1 263 1995 2257 Gigaspora margarita partial 28S rRNA gene, strain BEG34, isolate spore 4, clone BL2_6_26 blastn 37667 486 1 Eukaryota Opisthokonta Fungi Mucoromycota Glomeromycetes Diversisporales Gigasporaceae Gigaspora Gigaspora margarita

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;