RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA752572" and tax_phylum = "Cyanobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Cyanobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA752572 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8381889 8381889 PRJNA752572_P_NODE_221087_length_178_cov_1.944056_g220580_i0 PRJNA752572 221087 178 1.944056 3.46041968 Cylindrospermum stagnale 142864 Bacteria Bacteria 54.7 0.004   NTclustered gi|428256439|gb|CP003642.1| 56107 g220580 i0 100 0.162921348314607 29 0 16 0 2 30 2711803 2711831 Cylindrospermum stagnale PCC 7417, complete genome blastn 29 54.7 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Nostocales Nostocaceae Cylindrospermum Cylindrospermum stagnale
12681018 12681018 PRJNA752572_P_NODE_82030_length_300_cov_1.622642_g81523_i0 PRJNA752572 82030 300 1.622642 4.867926 Oscillatoriales 1150 Bacteria Bacteria 544 3.78e-150   NTclustered gi|1345606773|gb|MG968507.1| 1521532 g81523 i0 99.333 147.8 300 2 100 0 1 300 273 572 Oscillatoria amoena SAG 1459-7 23S ribosomal RNA gene, partial sequence blastn 44340 544 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Oscillatoriales Oscillatoriaceae Oscillatoria Oscillatoria amoena
16031259 16031259 PRJNA752572_P_NODE_63633_length_342_cov_1.811075_g63126_i0 PRJNA752572 63633 342 1.811075 6.1938765 Nostoc sp. MS1 2764711 Bacteria Bacteria 60.2 1.93e-4   NTclustered gi|2093825993|dbj|AP023441.1| 2764711 g63126 i0 94.737 0.111111111111111 38 2 11 0 6 43 6113475 6113512 Nostoc sp. MS1 DNA, complete genome blastn 38 60.2 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Nostocales Nostocaceae Nostoc Nostoc sp. MS1
22405990 22405990 PRJNA752572_P_NODE_229898_length_174_cov_2.928058_g229391_i0 PRJNA752572 229898 174 2.928058 5.09482092 Nostoc piscinale 224012 Bacteria Bacteria 56.5 0.001   NTclustered gi|930349143|gb|CP012036.1| 224013 g229391 i0 86.275 0.293103448275862 51 7 29 0 111 161 202655 202705 Nostoc piscinale CENA21 chromosome blastn 51 56.5 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Nostocales Nostocaceae Nostoc Nostoc piscinale

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;