RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA752572" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA752572 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13482415 13482415 PRJNA752572_P_NODE_134671_length_231_cov_1.535714_g134164_i0 PRJNA752572 134671 231 1.535714 3.54749934 Polychytrium aggregatum 110093 Fungi Fungi 84.2 7.32e-12   NTclustered gi|2432158676|ref|XM_053113190.1| 110093 g134164 i0 91.667 22.7922077922078 60 5 26 0 78 137 129 70 Polychytrium aggregatum ribosomal protein S25 component of cytosolic 80S ribosome and 40S small subunit (BJ171DRAFT_559057), partial mRNA blastn 5265 84.2 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
14757531 14757531 PRJNA752572_P_NODE_32332_length_480_cov_3.986517_g31839_i0 PRJNA752572 32332 480 3.986517 19.1352816 Polychytrium aggregatum 110093 Fungi Fungi 54.7 0.013   NTclustered gi|2432144566|ref|XM_053115345.1| 110093 g31839 i0 100 0.0604166666666667 29 0 6 0 73 101 581 553 Polychytrium aggregatum ran-specific GTPase-activating protein (BJ171DRAFT_616054), mRNA blastn 29 54.7 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;