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contig_metadata

11 rows where analysis = "blastn", bioproject = "PRJNA752278" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 11 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA752278 · 11 ✖

analysis 1

  • blastn · 11 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2003149 2003149 PRJNA752278_P_NODE_23942_length_333_cov_1.184615_g23739_i0 PRJNA752278 23942 333 1.184615 3.94476795 Caenorhabditis briggsae 6238 Nematoda Nematoda 211 4.89e-50   NTclustered gi|268537031|ref|XM_002633606.1| 6238 g23739 i0 82.305 17.7027027027027 243 43 73 0 91 333 377 135 Caenorhabditis briggsae Protein CBR-RPS-23 (Cbr-rps-23), partial mRNA blastn 5895 211 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
2003174 2003174 PRJNA752278_P_NODE_2462_length_756_cov_1.758419_g2274_i0 PRJNA752278 2462 756 1.758419 13.29364764 Pristionchus microcercus 3308705 Nematoda Nematoda 401 6.529999999999999e-107   NTclustered gi|675118833|gb|KJ877296.1| 3308705 g2274 i0 77.469 79.5767195767196 719 130 93 26 9 711 746 44 Paroigolaimella micrura large subunit ribosomal protein 2 (rpl-2) mRNA, partial cds blastn 60160 401 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus microcercus
4556011 4556011 PRJNA752278_P_NODE_4544_length_604_cov_97.312618_g4344_i0 PRJNA752278 4544 604 97.312618 587.76821272 Pristionchus pauli 376545 Nematoda Nematoda 292 3.2399999999999994e-74   NTclustered gi|150982019|gb|EF634598.1| 376545 g4344 i0 81.492 3.73509933774834 362 61 59 6 97 455 37 395 Pristionchus pauli large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 2256 292 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pauli
7107120 7107120 PRJNA752278_P_NODE_92546_length_245_cov_2.348837_g92343_i0 PRJNA752278 92546 245 2.348837 5.75465065 Caenorhabditis briggsae 6238 Nematoda Nematoda 261 3.38e-65   NTclustered gi|2158428434|ref|XM_002640590.2| 6238 g92343 i0 88.128 78.2408163265306 219 26 89 0 25 243 352 134 Caenorhabditis briggsae Protein CBR-RPS-20 (Cbr-rps-20), partial mRNA blastn 19169 261 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
8380241 8380241 PRJNA752278_P_NODE_15807_length_386_cov_1.348243_g15604_i0 PRJNA752278 15807 386 1.348243 5.20421798 Caenorhabditis brenneri 135651 Nematoda Nematoda 219 3.4299999999999995e-52   NTclustered gi|241017545|gb|GQ169498.1| 135651 g15604 i0 79.299 137.932642487047 314 63 81 2 64 376 377 65 Caenorhabditis brenneri clone T4AA06.09 putative ubiquitin family protein mRNA, partial cds blastn 53242 219 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis brenneri
14755907 14755907 PRJNA752278_P_NODE_19352_length_359_cov_2.629371_g19149_i0 PRJNA752278 19352 359 2.629371 9.43944189 Caenorhabditis briggsae 6238 Nematoda Nematoda 71.3 9.39e-8   NTclustered gi|2158414254|ref|XM_045235522.1| 6238 g19149 i0 97.561 9.9025069637883 41 1 11 0 175 215 2913 2953 Caenorhabditis briggsae Protein CBR-UNC-82 (Cbr-unc-82), partial mRNA blastn 3555 71.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
18579546 18579546 PRJNA752278_P_NODE_5775_length_555_cov_88.095436_g5573_i0 PRJNA752278 5775 555 88.095436 488.9296698 Pristionchus hoplostomus 1355913 Nematoda Nematoda 167 1.87e-36   NTclustered gi|524845312|gb|KC819366.1| 1355913 g5573 i0 81.166 24.0324324324324 223 28 39 11 268 483 264 49 Pristionchus hoplostomus strain JU1090 subunit ribosomal protein 20 (rps-20) mRNA, partial cds blastn 13338 167 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus hoplostomus
18579553 18579553 PRJNA752278_P_NODE_5815_length_554_cov_2.203742_g5613_i0 PRJNA752278 5815 554 2.203742 12.20873068 Caenorhabditis elegans 6239 Nematoda Nematoda 313 2.27e-80   NTclustered gi|1972235517|ref|NM_001026355.6| 6239 g5613 i0 77.639 46.9458483754513 559 95 98 28 11 554 669 1212 Caenorhabditis elegans ATP synthase subunit alpha, mitochondrial (atp-1), mRNA blastn 26008 313 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
19853841 19853841 PRJNA752278_P_NODE_106356_length_238_cov_3.260606_g106153_i0 PRJNA752278 106356 238 3.260606 7.76024228 Oigolaimella attenuata 669116 Nematoda Nematoda 152 2.05e-32   NTclustered gi|256709322|gb|GQ422336.1| 669116 g106153 i0 78.814 7.34033613445378 236 42 97 6 7 238 306 75 Oigolaimella attenuata large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 1747 152 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Oigolaimella Oigolaimella attenuata
19855405 19855405 PRJNA752278_P_NODE_86476_length_248_cov_0.880000_g86273_i0 PRJNA752278 86476 248 0.88 2.1824 Caenorhabditis briggsae 6238 Nematoda Nematoda 147 1e-30   NTclustered gi|2158424922|ref|XM_045237347.1| 6238 g86273 i0 81.768 20.8588709677419 181 27 72 6 71 248 538 361 Caenorhabditis briggsae Protein CBR-EFT-2 (Cbr-eft-2), partial mRNA blastn 5173 147 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
23679979 23679979 PRJNA752278_P_NODE_17919_length_369_cov_4.385135_g17716_i0 PRJNA752278 17919 369 4.385135 16.18114815 Oigolaimella attenuata 669116 Nematoda Nematoda 281 4.11e-71   NTclustered gi|256709322|gb|GQ422336.1| 669116 g17716 i0 84.561 35.9376693766938 285 42 77 2 1 284 325 42 Oigolaimella attenuata large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 13261 281 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Oigolaimella Oigolaimella attenuata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;