RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA752278" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA752278 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3752551 3752551 PRJNA752278_P_NODE_32103_length_302_cov_3.021834_g31900_i0 PRJNA752278 32103 302 3.021834 9.12593868 Pseudo-nitzschia 41953 SAR_Eukaryotes SAR_Eukaryotes 472 1.82e-128   NTclustered gi|642527|gb|U18240.1|NPU18240 37318 g31900 i0 95.139 94.1986754966887 288 12 95 1 17 302 11 298 Pseudo-nitzschia pungens small subunit rRNA and 5.8S rRNA genes, partial sequence blastn 28448 472 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Pseudo-nitzschia Pseudo-nitzschia pungens
7105537 7105537 PRJNA752278_P_NODE_108246_length_233_cov_2.525000_g108043_i0 PRJNA752278 108246 233 2.525 5.88325 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 267 6.839999999999999e-67   NTclustered gi|657012465|gb|KF302574.1| 2850 g108043 i0 87.446 0.991416309012876 231 29 99 0 1 231 6 236 Phaeodactylum tricornutum clone C567 ribosomal protein mRNA, partial cds blastn 231 267 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
18578692 18578692 PRJNA752278_P_NODE_1575_length_893_cov_12.860976_g1402_i0 PRJNA752278 1575 893 12.860976 114.84851568 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 433 2.75e-116   NTclustered gi|657012367|gb|KF302531.1| 2850 g1402 i0 88.187 57.3673012318029 364 41 41 2 282 644 385 23 Phaeodactylum tricornutum clone C443 40S ribosomal protein mRNA, partial cds blastn 51229 433 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;