RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

14 rows where analysis = "blastn", bioproject = "PRJNA752278" and tax_kingdom = "Shotokuvirae"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Shotokuvirae · 14 ✖

bioproject 1

  • PRJNA752278 · 14 ✖

analysis 1

  • blastn · 14 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
727121 727121 PRJNA752278_P_NODE_2441_length_759_cov_2.053936_g2253_i0 PRJNA752278 2441 759 2.053936 15.58937424 Gammapapillomavirus 1 333926 Viruses Viruses 1402 0   NTclustered gi|312100|emb|X70829.1| 28312 g2253 i0 100 3.12252964426877 759 0 100 0 1 759 5304 4546 Human papillomavirus type 65 complete genome blastn 2370 1402 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Gammapapillomavirus Gammapapillomavirus 1
2003851 2003851 PRJNA752278_P_NODE_5782_length_555_cov_2.871369_g5580_i0 PRJNA752278 5782 555 2.871369 15.93609795 Gammapapillomavirus 1 333926 Viruses Viruses 1026 0   NTclustered gi|312100|emb|X70829.1| 28312 g5580 i0 100 1.9009009009009 555 0 100 0 1 555 7255 6701 Human papillomavirus type 65 complete genome blastn 1055 1026 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Gammapapillomavirus Gammapapillomavirus 1
5830778 5830778 PRJNA752278_P_NODE_2505_length_752_cov_1.949926_g2317_i0 PRJNA752278 2505 752 1.949926 14.66344352 Gammapapillomavirus 1 333926 Viruses Viruses 1389 0   NTclustered gi|312100|emb|X70829.1| 28312 g2317 i0 100 8.3563829787234 752 0 100 0 1 752 5440 6191 Human papillomavirus type 65 complete genome blastn 6284 1389 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Gammapapillomavirus Gammapapillomavirus 1
5832019 5832019 PRJNA752278_P_NODE_925_length_1102_cov_2.376093_g778_i0 PRJNA752278 925 1102 2.376093 26.18454486 Gammapapillomavirus 1 333926 Viruses Viruses 2030 0   NTclustered gi|312100|emb|X70829.1| 28312 g778 i0 99.909 5.3529945553539 1102 1 100 0 1 1102 898 1999 Human papillomavirus type 65 complete genome blastn 5899 2030 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Gammapapillomavirus Gammapapillomavirus 1
8380058 8380058 PRJNA752278_P_NODE_107287_length_236_cov_2.196319_g107084_i0 PRJNA752278 107287 236 2.196319 5.18331284 Gammapapillomavirus 1 333926 Viruses Viruses 436 4.999999999999999e-118   NTclustered gi|312100|emb|X70829.1| 28312 g107084 i0 100 2 236 0 100 0 1 236 2003 2238 Human papillomavirus type 65 complete genome blastn 472 436 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Gammapapillomavirus Gammapapillomavirus 1
8381839 8381839 PRJNA752278_P_NODE_9987_length_455_cov_1.816754_g9784_i0 PRJNA752278 9987 455 1.816754 8.2662307 Gammapapillomavirus 1 333926 Viruses Viruses 841 0   NTclustered gi|312100|emb|X70829.1| 28312 g9784 i0 100 5.84835164835165 455 0 100 0 1 455 345 799 Human papillomavirus type 65 complete genome blastn 2661 841 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Gammapapillomavirus Gammapapillomavirus 1
9655466 9655466 PRJNA752278_P_NODE_16688_length_379_cov_1.284314_g16485_i0 PRJNA752278 16688 379 1.284314 4.86755006 Gammapapillomavirus 1 333926 Viruses Viruses 701 0   NTclustered gi|312100|emb|X70829.1| 28312 g16485 i0 100 4.59630606860158 379 0 100 0 1 379 6219 6597 Human papillomavirus type 65 complete genome blastn 1742 701 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Gammapapillomavirus Gammapapillomavirus 1
13480777 13480777 PRJNA752278_P_NODE_15151_length_391_cov_2.584906_g14948_i0 PRJNA752278 15151 391 2.584906 10.10698246 Gammapapillomavirus 1 333926 Viruses Viruses 717 0   NTclustered gi|312100|emb|X70829.1| 28312 g14948 i0 99.744 5.26086956521739 391 1 100 0 1 391 3499 3109 Human papillomavirus type 65 complete genome blastn 2057 717 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Gammapapillomavirus Gammapapillomavirus 1
14755946 14755946 PRJNA752278_P_NODE_20932_length_349_cov_5.123188_g20729_i0 PRJNA752278 20932 349 5.123188 17.87992612 Gammapapillomavirus 1 333926 Viruses Viruses 640 5.529999999999999e-179   NTclustered gi|312100|emb|X70829.1| 28312 g20729 i0 99.714 1.00286532951289 350 0 100 1 1 349 4224 4573 Human papillomavirus type 65 complete genome blastn 350 640 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Gammapapillomavirus Gammapapillomavirus 1
14756157 14756157 PRJNA752278_P_NODE_2992_length_702_cov_2.106518_g2801_i0 PRJNA752278 2992 702 2.106518 14.78775636 Gammapapillomavirus 1 333926 Viruses Viruses 1286 0   NTclustered gi|312100|emb|X70829.1| 28312 g2801 i0 99.715 4.41737891737892 702 2 100 0 1 702 3500 4201 Human papillomavirus type 65 complete genome blastn 3101 1286 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Gammapapillomavirus Gammapapillomavirus 1
19855095 19855095 PRJNA752278_P_NODE_7016_length_516_cov_3.311512_g6813_i0 PRJNA752278 7016 516 3.311512 17.08740192 Gammapapillomavirus 1 333926 Viruses Viruses 953 0   NTclustered gi|312100|emb|X70829.1| 28312 g6813 i0 100 3.67441860465116 516 0 100 0 1 516 2529 3044 Human papillomavirus type 65 complete genome blastn 1896 953 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Gammapapillomavirus Gammapapillomavirus 1
22405237 22405237 PRJNA752278_P_NODE_61338_length_266_cov_2.279793_g61135_i0 PRJNA752278 61338 266 2.279793 6.06424938 Gammapapillomavirus 1 333926 Viruses Viruses 492 1.2099999999999999e-134   NTclustered gi|312100|emb|X70829.1| 28312 g61135 i0 100 5.32706766917293 266 0 100 0 1 266 2279 2544 Human papillomavirus type 65 complete genome blastn 1417 492 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Gammapapillomavirus Gammapapillomavirus 1
24152741 24152741 PRJNA752278_P_NODE_61479_length_266_cov_2.015544_g61276_i0 PRJNA752278 61479 266 2.015544 5.36134704 Viruses 10239 Viruses Viruses 492 1.2099999999999999e-134   NTclustered gi|2814138551|gb|PQ313133.1| 1940570 g61276 i0 100 2 266 0 100 0 1 266 466 731 Parvoviridae sp. isolate SpinColumn18, partial genome blastn 532 492 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   Parvoviridae sp.
25427300 25427300 PRJNA752278_P_NODE_19120_length_361_cov_1.447917_g18917_i0 PRJNA752278 19120 361 1.447917 5.22698037 Viruses 10239 Viruses Viruses 446 1.34e-120   NTclustered gi|2045611283|gb|MW046548.1| 2794472 g18917 i0 90.774 1.60664819944598 336 28 92 2 1 333 1222 1557 MAG: Ciconia boyciana parvoviridae sp. isolate whs72par019 genomic sequence, sequence blastn 580 446 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   Ciconia boyciana parvoviridae sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;