RNAquarium Metadata Server
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contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJNA752278" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 10 ✖

bioproject 1

  • PRJNA752278 · 10 ✖

analysis 1

  • blastn · 10 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
726679 726679 PRJNA752278_P_NODE_102521_length_242_cov_0.911243_g102318_i0 PRJNA752278 102521 242 0.911243 2.20520806 Leptotrichia wadei 157687 Bacteria Bacteria 448 2.3799999999999995e-121   NTclustered gi|1708575239|dbj|AP019834.1| 157687 g102318 i0 100 7.85123966942149 242 0 100 0 1 242 1753942 1754183 Leptotrichia wadei JMUB3933 DNA, complete genome blastn 1900 448 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia wadei
727892 727892 PRJNA752278_P_NODE_65521_length_262_cov_2.375661_g65318_i0 PRJNA752278 65521 262 2.375661 6.22423182 Leptotrichia buccalis 40542 Bacteria Bacteria 484 1.99e-132   NTclustered gi|257048753|gb|CP001685.1| 523794 g65318 i0 100 10.8129770992366 262 0 100 0 1 262 1534873 1534612 Leptotrichia buccalis DSM 1135, complete genome blastn 2833 484 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia buccalis
2004523 2004523 PRJNA752278_P_NODE_95702_length_244_cov_1.637427_g95499_i0 PRJNA752278 95702 244 1.637427 3.99532188 Fusobacterium pseudoperiodonticum 2663009 Bacteria Bacteria 429 8.699999999999998e-116   NTclustered gi|1276709865|gb|CP024700.1| 2663009 g95499 i0 98.361 100.016393442623 244 4 100 0 1 244 762210 761967 Fusobacterium pseudoperiodonticum strain KCOM 1263 chromosome, complete genome blastn 24404 429 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium pseudoperiodonticum
3278046 3278046 PRJNA752278_P_NODE_102303_length_242_cov_0.911243_g102100_i0 PRJNA752278 102303 242 0.911243 2.20520806 Leptotrichia wadei 157687 Bacteria Bacteria 436 5.1499999999999985e-118   NTclustered gi|1708582457|dbj|AP019841.1| 157687 g102100 i0 99.174 4.46280991735537 242 2 100 0 1 242 239035 239276 Leptotrichia wadei JMUB3936 DNA, complete genome blastn 1080 436 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia wadei
3278946 3278946 PRJNA752278_P_NODE_48743_length_278_cov_2.004878_g48540_i0 PRJNA752278 48743 278 2.004878 5.57356084 Leptotrichia hofstadii 157688 Bacteria Bacteria 475 1.2799999999999997e-129   NTclustered gi|1708566027|dbj|AP019823.1| 157688 g48540 i0 97.482 11.9820143884892 278 7 100 0 1 278 2534222 2534499 Leptotrichia hofstadii JCM16775 DNA, complete genome blastn 3331 475 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia hofstadii
5029488 5029488 PRJNA752278_P_NODE_76104_length_252_cov_1.720670_g75901_i0 PRJNA752278 76104 252 1.72067 4.3360884 Fusobacterium 848 Bacteria Bacteria 464 2.4799999999999998e-126   NTclustered gi|958162200|gb|CP013331.1| 1307442 g75901 i0 100 99.6388888888889 251 0 99 0 2 252 2162595 2162845 Fusobacterium hwasookii ChDC F174, complete genome blastn 25109 464 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium hwasookii
8381013 8381013 PRJNA752278_P_NODE_54847_length_272_cov_2.698492_g54644_i0 PRJNA752278 54847 272 2.698492 7.33989824 Fusobacterium polymorphum 76857 Bacteria Bacteria 503 5.729999999999998e-138   NTclustered gi|2078816781|gb|CP071094.1| 76857 g54644 i0 100 503.889705882353 272 0 100 0 1 272 260683 260412 Fusobacterium polymorphum strain THCT15E1 chromosome, complete genome blastn 137058 503 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum
21130160 21130160 PRJNA752278_P_NODE_46637_length_280_cov_1.956522_g46434_i0 PRJNA752278 46637 280 1.956522 5.4782616 Leptotrichia wadei 157687 Bacteria Bacteria 512 9.85e-141   NTclustered gi|1708582457|dbj|AP019841.1| 157687 g46434 i0 99.643 172.3 280 1 100 0 1 280 1228614 1228893 Leptotrichia wadei JMUB3936 DNA, complete genome blastn 48244 512 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia wadei
22405481 22405481 PRJNA752278_P_NODE_74218_length_254_cov_1.635359_g74015_i0 PRJNA752278 74218 254 1.635359 4.15381186 Leptotrichia sp. oral taxon 212 712357 Bacteria Bacteria 431 2.539999999999999e-116   NTclustered gi|922689899|gb|CP012410.1| 712357 g74015 i0 97.244 2.99606299212598 254 7 100 0 1 254 2357937 2357684 Leptotrichia sp. oral taxon 212 strain W10393, complete genome blastn 761 431 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 212
22405713 22405713 PRJNA752278_P_NODE_86618_length_248_cov_0.880000_g86415_i0 PRJNA752278 86618 248 0.88 2.1824 Leptotrichia wadei 157687 Bacteria Bacteria 459 1.13e-124   NTclustered gi|1708582457|dbj|AP019841.1| 157687 g86415 i0 100 4.9758064516129 248 0 100 0 1 248 1730207 1730454 Leptotrichia wadei JMUB3936 DNA, complete genome blastn 1234 459 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia wadei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;