RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA752278" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 4 ✖

bioproject 1

  • PRJNA752278 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4555924 4555924 PRJNA752278_P_NODE_39564_length_287_cov_1.799065_g39361_i0 PRJNA752278 39564 287 1.799065 5.16331655 uncultured Candidatus Saccharibacteria bacterium 179883 Bacteria Bacteria 182 3.24e-41   NTclustered gi|2874254068|emb|OY970151.1| 179883 g39361 i0 78.832 2.95470383275261 274 54 95 4 3 274 743927 743656 MAG: uncultured Candidatus Saccharibacteria bacterium isolate MFD00082.bin.2.65 genome assembly, chromosome: 1 blastn 848 182 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         uncultured Candidatus Saccharibacteria bacterium
7106347 7106347 PRJNA752278_P_NODE_49286_length_278_cov_1.312195_g49083_i0 PRJNA752278 49286 278 1.312195 3.6479021 Candidatus Saccharibacteria bacterium TM7i 2980174 Bacteria Bacteria 459 1.29e-124   NTclustered gi|2306681518|gb|CP075337.1| 2980174 g49083 i0 96.416 125.032374100719 279 9 100 1 1 278 665564 665842 Candidatus Saccharibacteria bacterium TM7i chromosome, complete genome blastn 34759 459 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria bacterium TM7i
12680753 12680753 PRJNA752278_P_NODE_64470_length_263_cov_2.373684_g64267_i0 PRJNA752278 64470 263 2.373684 6.24278892 Candidatus Southlakia 3350975 Bacteria Bacteria 196 1.05e-45   NTclustered gi|2028829559|gb|CP072328.1| 713051 g64267 i0 81.481 1.85171102661597 243 41 92 4 23 263 18031 18271 TM7 phylum sp. oral taxon 349 strain PM007 chromosome, complete genome blastn 487 196 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         TM7 phylum sp. oral taxon 349
24954992 24954992 PRJNA752278_P_NODE_93800_length_245_cov_0.895349_g93597_i0 PRJNA752278 93800 245 0.895349 2.19360505 Candidatus Gracilibacteria bacterium HOT-871 1540872 Bacteria Bacteria 58.4 4.75e-4   NTclustered gi|1275383184|gb|CP017714.1| 1540872 g93597 i0 88 0.624489795918367 50 5 20 1 185 233 420473 420424 Candidatus Gracilibacteria bacterium HOT-871, complete genome blastn 153 58.4 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium HOT-871

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;