RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA752278" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 7 ✖

bioproject 1

  • PRJNA752278 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5830911 5830911 PRJNA752278_P_NODE_32165_length_302_cov_2.017467_g31962_i0 PRJNA752278 32165 302 2.017467 6.09275034 Thecamonas trahens 529818 Root_unresolved Root_unresolved 183 9.559999999999998e-42   NTclustered gi|923124278|ref|XM_013900154.1| 461836 g31962 i0 80.833 0.794701986754967 240 40 78 4 52 288 616 380 Thecamonas trahens ATCC 50062 40S ribosomal protein (AMSG_08278), mRNA blastn 240 183 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
7105642 7105642 PRJNA752278_P_NODE_13346_length_409_cov_3.005952_g13143_i0 PRJNA752278 13346 409 3.005952 12.29434368 Thecamonas trahens 529818 Root_unresolved Root_unresolved 100 1.38e-16   NTclustered gi|923125257|ref|XM_013900643.1| 461836 g13143 i0 81.301 0.300733496332518 123 23 30 0 285 407 482 360 Thecamonas trahens ATCC 50062 50S ribosomal protein L19e (AMSG_07625), partial mRNA blastn 123 100 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
7106465 7106465 PRJNA752278_P_NODE_55906_length_271_cov_2.777778_g55703_i0 PRJNA752278 55906 271 2.777778 7.52777838 Thecamonas trahens 529818 Root_unresolved Root_unresolved 54.7 0.007   NTclustered gi|923130972|ref|XM_013903498.1| 461836 g55703 i0 96.875 0.22140221402214 32 1 12 0 182 213 3304 3335 Thecamonas trahens ATCC 50062 cell division control protein (AMSG_04168), partial mRNA blastn 60 54.7 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
17305311 17305311 PRJNA752278_P_NODE_2754_length_726_cov_2.445636_g2563_i0 PRJNA752278 2754 726 2.445636 17.75531736 Thecamonas trahens 529818 Root_unresolved Root_unresolved 163 3.22e-35   NTclustered gi|923132316|ref|XM_013904170.1| 461836 g2563 i0 85 1.74242424242424 160 24 22 0 530 689 190 31 Thecamonas trahens ATCC 50062 50S ribosomal protein L37a (AMSG_03714), partial mRNA blastn 1265 163 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
17305633 17305633 PRJNA752278_P_NODE_4394_length_611_cov_26.949814_g4195_i0 PRJNA752278 4394 611 26.949814 164.66336354 Thecamonas trahens 529818 Root_unresolved Root_unresolved 224 1.21e-53   NTclustered gi|923125359|ref|XM_013900694.1| 461836 g4195 i0 82.879 10.9050736497545 257 36 41 6 155 407 529 277 Thecamonas trahens ATCC 50062 calmodulin (AMSG_07687), mRNA blastn 6663 224 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
18579636 18579636 PRJNA752278_P_NODE_61955_length_266_cov_1.393782_g61752_i0 PRJNA752278 61955 266 1.393782 3.70746012 Thecamonas trahens 529818 Root_unresolved Root_unresolved 156 1.7999999999999998e-33   NTclustered gi|923132316|ref|XM_013904170.1| 461836 g61752 i0 88.372 2.60902255639098 129 15 48 0 34 162 26 154 Thecamonas trahens ATCC 50062 50S ribosomal protein L37a (AMSG_03714), partial mRNA blastn 694 156 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
22405736 22405736 PRJNA752278_P_NODE_878_length_1120_cov_59.762178_g732_i0 PRJNA752278 878 1120 59.762178 669.3363936 Thecamonas trahens 529818 Root_unresolved Root_unresolved 409 5.869999999999999e-109   NTclustered gi|923134252|ref|XM_013905138.1| 461836 g732 i0 76.549 17.5651785714286 823 147 71 33 201 1000 997 198 Thecamonas trahens ATCC 50062 adenine nucleotide translocator (AMSG_02751), mRNA blastn 19673 409 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;