RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA751877" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA751877 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7105270 7105270 PRJNA751877_P_NODE_4546_length_449_cov_1.228723_g4424_i0 PRJNA751877 4546 449 1.228723 5.51696627 Caenorhabditis elegans 6239 Nematoda Nematoda 771 0   NTclustered gi|1429284|emb|Z75954.1| 6239 g4424 i0 98.845 2.79287305122494 433 4 96 1 1 432 1168 736 Caenorhabditis elegans Cosmid F58H1, complete sequence blastn 1254 771 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
16028937 16028937 PRJNA751877_P_NODE_18993_length_271_cov_3.085859_g18871_i0 PRJNA751877 18993 271 3.085859 8.36267789 Caenorhabditis elegans 6239 Nematoda Nematoda 501 2.05e-137   NTclustered gi|687865328|emb|LK927659.1| 6239 g18871 i0 100 13.8929889298893 271 0 100 0 1 271 88846 89116 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000114 blastn 3765 501 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
17304661 17304661 PRJNA751877_P_NODE_4474_length_451_cov_1.404762_g4352_i0 PRJNA751877 4474 451 1.404762 6.33547662 Caenorhabditis elegans 6239 Nematoda Nematoda 688 0   NTclustered gi|1429284|emb|Z75954.1| 6239 g4352 i0 100 4.09534368070953 372 0 82 0 1 372 1859 2230 Caenorhabditis elegans Cosmid F58H1, complete sequence blastn 1847 688 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;