RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA751877" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA751877 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
726275 726275 PRJNA751877_P_NODE_19681_length_267_cov_1.582474_g19559_i0 PRJNA751877 19681 267 1.582474 4.22520558 Corallococcus coralloides 184914 Bacteria Bacteria 470 5.689999999999999e-128   NTclustered gi|2851136330|gb|CP172866.1| 184914 g19559 i0 100 0.951310861423221 254 0 95 0 14 267 7485639 7485892 Corallococcus coralloides strain KYC2213 chromosome, complete genome blastn 254 470 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus coralloides
5830112 5830112 PRJNA751877_P_NODE_29425_length_242_cov_0.911243_g29303_i0 PRJNA751877 29425 242 0.911243 2.20520806 Anaeromyxobacter sp. K 447217 Bacteria Bacteria 148 2.6999999999999997e-31   NTclustered gi|196170270|gb|CP001131.1| 447217 g29303 i0 83.03 3.17768595041322 165 26 68 2 17 180 634480 634317 Anaeromyxobacter sp. K, complete genome blastn 769 148 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Anaeromyxobacteraceae Anaeromyxobacter Anaeromyxobacter sp. K
8853452 8853452 PRJNA751877_P_NODE_6787_length_394_cov_0.890966_g6665_i0 PRJNA751877 6787 394 0.890966 3.51040604 Archangium 47 Bacteria Bacteria 52.8 0.038   NTclustered gi|2579687829|gb|CP043494.1| 83450 g6665 i0 100 0.142131979695431 28 0 7 0 214 241 7254581 7254608 Archangium minus strain Cbm 6 chromosome, complete genome blastn 56 52.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium minus
11404066 11404066 PRJNA751877_P_NODE_26149_length_246_cov_0.890173_g26027_i0 PRJNA751877 26149 246 0.890173 2.18982558 Myxococcus 32 Bacteria Bacteria 455 1.4500000000000002e-123   NTclustered gi|2869653495|gb|CP175551.1| 33 g26027 i0 100 48.4552845528455 246 0 100 0 1 246 6441534 6441289 Myxococcus fulvus strain KYC1117 chromosome, complete genome blastn 11920 455 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus fulvus
23679430 23679430 PRJNA751877_P_NODE_28319_length_243_cov_0.905882_g28197_i0 PRJNA751877 28319 243 0.905882 2.20129326 Myxococcus fulvus 33 Bacteria Bacteria 411 3.14e-110   NTclustered gi|2869653495|gb|CP175551.1| 33 g28197 i0 97.119 2.96707818930041 243 7 100 0 1 243 6169420 6169178 Myxococcus fulvus strain KYC1117 chromosome, complete genome blastn 721 411 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus fulvus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;