RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA751877" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA751877 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14755435 14755435 PRJNA751877_P_NODE_5272_length_428_cov_1.042254_g5150_i0 PRJNA751877 5272 428 1.042254 4.46084712 Dictyostelium purpureum 5786 Evosea other_Eukaryota 259 2.27e-64   NTclustered gi|330818907|ref|XM_003291484.1| 5786 g5150 i0 78.436 7.49766355140187 422 73 96 14 14 426 508 96 Dictyostelium purpureum ribosomal protein L10E (DICPUDRAFT_92700), mRNA blastn 3209 259 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
17304204 17304204 PRJNA751877_P_NODE_1134_length_712_cov_1.136150_g1017_i0 PRJNA751877 1134 712 1.13615 8.089388 Acramoeba dendroida 633159 Evosea other_Eukaryota 494 9.84e-135   NTclustered gi|146448853|gb|EF513194.1| 633159 g1017 i0 79.383 79.6039325842697 713 137 99 9 5 712 711 4 Acramoeba dendroida elongation factor 1A (EF1A) gene, partial cds blastn 56678 494 1 Eukaryota Amoebozoa   Evosea Variosea Fractovitellida Acramoebidae Acramoeba Acramoeba dendroida

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;