RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA751877" and tax_phylum = "Ciliophora"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA751877 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
726554 726554 PRJNA751877_P_NODE_5041_length_434_cov_3.958449_g4919_i0 PRJNA751877 5041 434 3.958449 17.17966866 Chilodonella uncinata 151077 SAR_Eukaryotes SAR_Eukaryotes 472 2.71e-128   NTclustered gi|301014695|gb|GQ377692.1| 151077 g4919 i0 87.05 8.66820276497696 417 54 96 0 18 434 438 22 Chilodonella uncinata ribosomal protein S23a-like (rps23a) mRNA, complete sequence blastn 3762 472 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella uncinata
10930595 10930595 PRJNA751877_P_NODE_9089_length_358_cov_2.617544_g8967_i0 PRJNA751877 9089 358 2.617544 9.37080752 Chilodonella uncinata 151077 SAR_Eukaryotes SAR_Eukaryotes 538 2.1299999999999992e-148   NTclustered gi|21632109|gb|AY041125.1| 151077 g8967 i0 93.838 99.7430167597765 357 22 99 0 1 357 501 145 Chilodonella uncinata clone 5 alpha-tubulin gene, partial cds blastn 35708 538 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella uncinata
11403807 11403807 PRJNA751877_P_NODE_12929_length_317_cov_1.737705_g12807_i0 PRJNA751877 12929 317 1.737705 5.50852485 Chilodonella 151076 SAR_Eukaryotes SAR_Eukaryotes 283 9.669999999999998e-72   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g12807 i0 94.149 51.3186119873817 188 8 59 3 2 189 1763 1947 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 16268 283 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
13480498 13480498 PRJNA751877_P_NODE_9691_length_351_cov_1.107914_g9569_i0 PRJNA751877 9691 351 1.107914 3.88877814 Chilodonella piscicola 1654720 SAR_Eukaryotes SAR_Eukaryotes 531 3.4899999999999992e-146   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g9569 i0 94.051 74.9059829059829 353 16 100 4 1 351 2433 2782 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 26292 531 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
13954299 13954299 PRJNA751877_P_NODE_3711_length_479_cov_1.660099_g3589_i0 PRJNA751877 3711 479 1.660099 7.95187421 Colpoda 5979 SAR_Eukaryotes SAR_Eukaryotes 880 0   NTclustered gi|89077592|gb|DQ388599.1| 63136 g3589 i0 99.792 98.5407098121086 480 0 100 1 1 479 1233 1712 Colpoda steinii strain Sp1 small subunit ribosomal RNA gene, partial sequence blastn 47201 880 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda steini
14755463 14755463 PRJNA751877_P_NODE_7172_length_387_cov_0.980892_g7050_i0 PRJNA751877 7172 387 0.980892 3.79605204 Cryptocaryon irritans 153251 SAR_Eukaryotes SAR_Eukaryotes 412 1.4699999999999994e-110   NTclustered gi|2431531581|ref|NC_070360.1| 153251 g7050 i0 86.269 112.087855297158 386 45 99 8 3 387 6306 5928 Cryptocaryon irritans mitochondrion, complete genome blastn 43378 412 1 Eukaryota Sar   Ciliophora       Cryptocaryon Cryptocaryon irritans
19853465 19853465 PRJNA751877_P_NODE_2356_length_554_cov_2.241164_g2235_i0 PRJNA751877 2356 554 2.241164 12.41604856 Chilodonella uncinata 151077 SAR_Eukaryotes SAR_Eukaryotes 568 4.3799999999999996e-157   NTclustered gi|300676719|gb|GQ377693.1| 151077 g2235 i0 86.038 4.01083032490975 530 72 95 2 1 529 18 546 Chilodonella uncinata gcr5-like mRNA, partial sequence blastn 2222 568 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella uncinata

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;