RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA751877" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA751877 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13480401 13480401 PRJNA751877_P_NODE_4691_length_445_cov_1.448925_g4569_i0 PRJNA751877 4691 445 1.448925 6.44771625 Polychytrium aggregatum 110093 Fungi Fungi 228 6.669999999999997e-55   NTclustered gi|2432159776|ref|XM_053111801.1| 110093 g4569 i0 81.588 49.3685393258427 277 49 62 2 56 331 118 393 Polychytrium aggregatum ribosomal protein S8e/ribosomal biogenesis NSA2 (BJ171DRAFT_514033), mRNA blastn 21969 228 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
22877916 22877916 PRJNA751877_P_NODE_3558_length_486_cov_1.290557_g3436_i0 PRJNA751877 3558 486 1.290557 6.27210702 Fungi 4751 Fungi Fungi 206 3.4399999999999995e-48   NTclustered gi|2432143272|ref|XM_053110602.1| 110093 g3436 i0 87.931 32.6584362139918 174 21 36 0 205 378 350 177 Polychytrium aggregatum 40S ribosomal protein S28 (BJ171DRAFT_500751), mRNA blastn 15872 206 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;