RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJNA751877" and tax_phylum = "Chordata"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chordata · 10 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA751877 · 10 ✖

analysis 1

  • blastn · 10 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2002576 2002576 PRJNA751877_P_NODE_4182_length_460_cov_2.180879_g4060_i0 PRJNA751877 4182 460 2.180879 10.0320434 Sphaerodactylus townsendi 933632 Chordata Chordata 52.8 0.045   NTclustered gi|2247582609|ref|XR_007243838.1| 933632 g4060 i0 100 0.243478260869565 28 0 6 0 347 374 2678 2705 PREDICTED: Sphaerodactylus townsendi uncharacterized LOC125428457 (LOC125428457), transcript variant X1, ncRNA blastn 112 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Sphaerodactylidae Sphaerodactylus Sphaerodactylus townsendi
5829894 5829894 PRJNA751877_P_NODE_19765_length_267_cov_1.164948_g19643_i0 PRJNA751877 19765 267 1.164948 3.11041116 Camarhynchus parvulus 87175 Chordata Chordata 52.8 0.024   NTclustered gi|1751540550|ref|XM_030969855.1| 87175 g19643 i0 96.774 0.116104868913858 31 1 12 0 110 140 1500 1530 PREDICTED: Camarhynchus parvulus uncharacterized LOC115916163 (LOC115916163), mRNA blastn 31 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Thraupidae Camarhynchus Camarhynchus parvulus
9654807 9654807 PRJNA751877_P_NODE_21328_length_257_cov_0.945652_g21206_i0 PRJNA751877 21328 257 0.945652 2.43032564 Anas platyrhynchos 8839 Chordata Chordata 313 9.71e-81   NTclustered gi|315258687|dbj|AB604925.1| 8839 g21206 i0 88.933 468.579766536965 253 28 100 0 1 253 222 474 Anas platyrhynchos DNA, similar to RBMII sequence, clone: 120 blastn 120425 313 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Anas Anas platyrhynchos
9655072 9655072 PRJNA751877_P_NODE_6848_length_392_cov_3.191223_g6726_i0 PRJNA751877 6848 392 3.191223 12.50959416 Octodon degus 10160 Chordata Chordata 82.4 4.78e-11   NTclustered gi|1334078208|ref|XR_001116960.2| 10160 g6726 i0 89.231 0.612244897959184 65 7 17 0 251 315 1175 1111 PREDICTED: Octodon degus 60S ribosomal protein L3 pseudogene (LOC101583111), misc_RNA blastn 240 82.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Octodontidae Octodon Octodon degus
10128994 10128994 PRJNA751877_P_NODE_30268_length_241_cov_0.916667_g30146_i0 PRJNA751877 30268 241 0.916667 2.20916747 Bos 9903 Chordata Chordata 401 1.8699999999999993e-107   NTclustered gi|2633854310|ref|XR_009735960.1| 9906 g30146 i0 96.68 1353.53526970954 241 8 100 0 1 241 4951 4711 PREDICTED: Bos javanicus uncharacterized LOC133246234 (LOC133246234), ncRNA blastn 326202 403 0.995037220843672 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos javanicus
10930291 10930291 PRJNA751877_P_NODE_22809_length_251_cov_0.865169_g22687_i0 PRJNA751877 22809 251 0.865169 2.17157419 Aphelocoma coerulescens 39617 Chordata Chordata 52.8 0.023   NTclustered gi|2813804346|ref|XM_069032554.1| 39617 g22687 i0 100 0.111553784860558 28 0 11 0 106 133 2498 2471 PREDICTED: Aphelocoma coerulescens transmembrane protein 100 (TMEM100), transcript variant X2, mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Corvidae Aphelocoma Aphelocoma coerulescens
10930445 10930445 PRJNA751877_P_NODE_28709_length_243_cov_0.905882_g28587_i0 PRJNA751877 28709 243 0.905882 2.20129326 Sphaerodactylus townsendi 933632 Chordata Chordata 86.1 2.16e-12   NTclustered gi|2247658341|ref|XM_048501431.1| 933632 g28587 i0 85.542 0.34156378600823 83 11 34 1 162 243 517 435 PREDICTED: Sphaerodactylus townsendi PHD finger protein 5A (PHF5A), mRNA blastn 83 86.1 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Sphaerodactylidae Sphaerodactylus Sphaerodactylus townsendi
17777726 17777726 PRJNA751877_P_NODE_1334_length_674_cov_2.227953_g1214_i0 PRJNA751877 1334 674 2.227953 15.01640322 root 1 Root_unresolved Root_unresolved 1107 0   NTclustered gi|2645168801|gb|OR992004.1| 10090 g1214 i0 100 88.7818991097923 599 0 89 0 76 674 806 208 Mus musculus transgenic puromycin-resistant protein (Puro) gene, complete cds; red fluorescence protein (RFP) gene, complete sequence; and GFP-I-SceI (GFP-I-SceI) gene, complete cds blastn 59839 1107 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
18578143 18578143 PRJNA751877_P_NODE_25355_length_247_cov_0.885057_g25233_i0 PRJNA751877 25355 247 0.885057 2.18609079 Phaethon lepturus 97097 Chordata Chordata 52.8 0.022   NTclustered gi|723146670|ref|XM_010292262.1| 97097 g25233 i0 100 0.11336032388664 28 0 11 0 184 211 834 807 PREDICTED: Phaethon lepturus family with sequence similarity 92, member A1 (FAM92A1), mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Phaethontiformes Phaethontidae Phaethon Phaethon lepturus
22877815 22877815 PRJNA751877_P_NODE_2598_length_537_cov_1.659483_g2476_i0 PRJNA751877 2598 537 1.659483 8.91142371 Canidae 9608 Chordata Chordata 228 8.169999999999998e-55   NTclustered gi|1953327281|ref|XM_038429311.1| 9615 g2476 i0 81.949 51.4543761638734 277 42 51 7 196 468 261 533 PREDICTED: Canis lupus familiaris ribosomal protein S15 (RPS15), mRNA blastn 27631 228 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Canis Canis lupus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;