RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA751877" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 4 ✖

bioproject 1

  • PRJNA751877 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8379816 8379816 PRJNA751877_P_NODE_30067_length_241_cov_0.916667_g29945_i0 PRJNA751877 30067 241 0.916667 2.20916747 Deinococcus yunweiensis 367282 Bacteria Bacteria 435 1.84e-117   NTclustered gi|2890653062|gb|CP177252.1| 367282 g29945 i0 99.17 39.5352697095436 241 2 100 0 1 241 1631946 1631706 Deinococcus yunweiensis strain KCTC 3955 chromosome, complete genome blastn 9528 435 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus yunweiensis
9655007 9655007 PRJNA751877_P_NODE_30368_length_238_cov_3.266667_g30246_i0 PRJNA751877 30368 238 3.266667 7.77466746 Deinococcus psychrotolerans 2489213 Bacteria Bacteria 89.8 1.63e-13   NTclustered gi|1527207013|gb|CP034185.1| 2489213 g30246 i0 89.855 2.33613445378151 69 7 29 0 128 196 117700 117768 Deinococcus psychrotolerans strain S14-83 plasmid unnamed1, complete sequence blastn 556 89.8 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus psychrotolerans
10128635 10128635 PRJNA751877_P_NODE_10968_length_336_cov_1.756654_g10846_i0 PRJNA751877 10968 336 1.756654 5.90235744 Deinococcus 1298 Bacteria Bacteria 106 2.4e-18   NTclustered gi|1751871007|dbj|AP021849.1| 57498 g10846 i0 94.203 3.30654761904762 69 4 21 0 166 234 2062224 2062292 Deinococcus grandis ATCC 43672 DNA, complete genome blastn 1111 106 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus grandis
12205949 12205949 PRJNA751877_P_NODE_28770_length_243_cov_0.905882_g28648_i0 PRJNA751877 28770 243 0.905882 2.20129326 Deinococcus ficus 317577 Bacteria Bacteria 444 3.09e-120   NTclustered gi|1220365372|gb|CP021083.1| 317577 g28648 i0 99.588 1.98353909465021 243 1 100 0 1 243 356376 356134 Deinococcus ficus strain CC-FR2-10 plasmid pDFI2, complete sequence blastn 482 444 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus ficus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;