RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA751877" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 8 ✖

bioproject 1

  • PRJNA751877 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
726381 726381 PRJNA751877_P_NODE_24201_length_249_cov_0.875000_g24079_i0 PRJNA751877 24201 249 0.875 2.17875 Chlamydomonas reinhardtii 3055 Plants Plants 119 2.19e-22   NTclustered gi|2082246007|ref|XM_001700625.2| 3055 g24079 i0 79.191 2.33734939759036 173 34 69 2 1 172 1516 1687 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_05g234639v5), mRNA blastn 582 119 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
4555042 4555042 PRJNA751877_P_NODE_3024_length_511_cov_2.264840_g2902_i0 PRJNA751877 3024 511 2.26484 11.5733324 Chlamydomonas reinhardtii 3055 Plants Plants 326 2.67e-84   NTclustered gi|2082248650|ref|XM_043063418.1| 3055 g2902 i0 82.759 70.4598825831703 377 53 73 11 141 511 857 487 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_06g290950v5), mRNA blastn 36005 326 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
5830141 5830141 PRJNA751877_P_NODE_3085_length_507_cov_5.983871_g2963_i0 PRJNA751877 3085 507 5.983871 30.33822597 Monoraphidium neglectum 145388 Plants Plants 339 3.4e-88   NTclustered gi|926773763|ref|XM_014039902.1| 145388 g2963 i0 79.641 60.1439842209073 501 78 96 22 13 501 489 1 Monoraphidium neglectum 60S ribosomal protein L19-2 mRNA blastn 30493 339 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
7105335 7105335 PRJNA751877_P_NODE_7766_length_377_cov_1.213816_g7644_i0 PRJNA751877 7766 377 1.213816 4.57608632 Monoraphidium neglectum 145388 Plants Plants 272 2.53e-68   NTclustered gi|926795717|ref|XM_014050538.1| 145388 g7644 i0 83 74.1220159151194 300 51 80 0 15 314 360 61 Monoraphidium neglectum 40S ribosomal protein S20-1 mRNA blastn 27944 272 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
10128710 10128710 PRJNA751877_P_NODE_14548_length_302_cov_1.344978_g14426_i0 PRJNA751877 14548 302 1.344978 4.06183356 Chlamydomonas 3052 Plants Plants 167 9.619999999999998e-37   NTclustered gi|2082236646|ref|XM_001689961.2| 3055 g14426 i0 84.795 33.0364238410596 171 20 56 6 118 285 556 389 Chlamydomonas reinhardtii ribosomal protein L11 (CHLRE_01g027000v5), mRNA blastn 9977 167 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
18578302 18578302 PRJNA751877_P_NODE_5635_length_418_cov_1.339130_g5513_i0 PRJNA751877 5635 418 1.33913 5.5975634 Chlamydomonas reinhardtii 3055 Plants Plants 305 2.8e-78   NTclustered gi|2082235498|ref|XM_001700320.2| 3055 g5513 i0 83.186 76.8421052631579 339 51 80 6 83 418 509 174 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_01g002300v5), mRNA blastn 32120 305 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
23679127 23679127 PRJNA751877_P_NODE_13999_length_307_cov_1.316239_g13877_i0 PRJNA751877 13999 307 1.316239 4.04085373 Auxenochlorella protothecoides 3075 Plants Plants 156 2.12e-33   NTclustered gi|760437580|ref|XM_011397557.1| 3075 g13877 i0 79.556 1.9771986970684 225 40 72 5 19 240 285 64 Auxenochlorella protothecoides Transcription factor BTF3 partial mRNA blastn 607 156 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
23679508 23679508 PRJNA751877_P_NODE_4179_length_460_cov_2.744186_g4057_i0 PRJNA751877 4179 460 2.744186 12.6232556 Monoraphidium neglectum 145388 Plants Plants 255 3.17e-63   NTclustered gi|926778303|ref|XM_014042172.1| 145388 g4057 i0 78.019 66.7326086956522 414 85 89 5 7 417 435 25 Monoraphidium neglectum 40S ribosomal protein S18 mRNA blastn 30697 255 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;