RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA751877" and tax_clade = "Amoebozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 6 ✖

bioproject 1

  • PRJNA751877 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6304121 6304121 PRJNA751877_P_NODE_15625_length_293_cov_1.018182_g15503_i0 PRJNA751877 15625 293 1.018182 2.98327326 Acanthamoeba 5754 Discosea other_Eukaryota 542 1.32e-149   NTclustered gi|2979652|gb|AF019052.1|AF019052 5757 g15503 i0 100 100.662116040956 293 0 100 0 1 293 719 1011 Acanthamoeba polyphaga Panola Mountain 18S ribosomal RNA gene, partial sequence blastn 29494 542 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba polyphaga
8379466 8379466 PRJNA751877_P_NODE_13227_length_314_cov_1.917012_g13105_i0 PRJNA751877 13227 314 1.917012 6.01941768 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 215 3.54e-51   NTclustered gi|470442906|ref|XM_004339540.1| 1257118 g13105 i0 84.545 30.4745222929936 220 30 69 4 1 218 85 302 Acanthamoeba castellanii str. Neff 60S ribosomal protein, putative (ACA1_063390), partial mRNA blastn 9569 215 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
13480429 13480429 PRJNA751877_P_NODE_6371_length_402_cov_1.401216_g6249_i0 PRJNA751877 6371 402 1.401216 5.63288832 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 551 3.119999999999999e-152   NTclustered gi|300078498|gb|GU001160.1| 5755 g6249 i0 92.138 15.547263681592 407 7 97 15 1 388 5911 5511 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 6250 551 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
14755435 14755435 PRJNA751877_P_NODE_5272_length_428_cov_1.042254_g5150_i0 PRJNA751877 5272 428 1.042254 4.46084712 Dictyostelium purpureum 5786 Evosea other_Eukaryota 259 2.27e-64   NTclustered gi|330818907|ref|XM_003291484.1| 5786 g5150 i0 78.436 7.49766355140187 422 73 96 14 14 426 508 96 Dictyostelium purpureum ribosomal protein L10E (DICPUDRAFT_92700), mRNA blastn 3209 259 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
17304204 17304204 PRJNA751877_P_NODE_1134_length_712_cov_1.136150_g1017_i0 PRJNA751877 1134 712 1.13615 8.089388 Acramoeba dendroida 633159 Evosea other_Eukaryota 494 9.84e-135   NTclustered gi|146448853|gb|EF513194.1| 633159 g1017 i0 79.383 79.6039325842697 713 137 99 9 5 712 711 4 Acramoeba dendroida elongation factor 1A (EF1A) gene, partial cds blastn 56678 494 1 Eukaryota Amoebozoa   Evosea Variosea Fractovitellida Acramoebidae Acramoeba Acramoeba dendroida
22877690 22877690 PRJNA751877_P_NODE_19098_length_271_cov_1.166667_g18976_i0 PRJNA751877 19098 271 1.166667 3.16166757 Acanthamoeba 5754 Discosea other_Eukaryota 501 2.05e-137   NTclustered gi|2756360496|gb|PQ002562.1| 5756 g18976 i0 100 99.9446494464945 271 0 100 0 1 271 606 876 Acanthamoeba sp. isolate PHAS18-2 small subunit ribosomal RNA gene, partial sequence blastn 27085 501 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;