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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA749559" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA749559 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2002020 2002020 PRJNA749559_P_NODE_4182_length_209_cov_0.864865_g4112_i0 PRJNA749559 4182 209 0.864865 1.80756785 Mus musculus 10090 Chordata Chordata 387 4.42e-103   NTclustered gi|26354541|dbj|AK089481.1| 10090 g4112 i0 100 18.4736842105263 209 0 100 0 1 209 2329 2537 Mus musculus B6-derived CD11 +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F730037M18 product:transglutaminase 2, C polypeptide, full insert sequence blastn 3861 387 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
4554458 4554458 PRJNA749559_P_NODE_2264_length_289_cov_1.881579_g2194_i0 PRJNA749559 2264 289 1.881579 5.43776331 Mus musculus 10090 Chordata Chordata 58.4 5.75e-4   NTclustered gi|55909027|gb|AC117208.3| 10090 g2194 i0 100 6.86851211072664 31 0 11 0 259 289 119062 119032 Mus musculus BAC clone RP23-279D15 from 10, complete sequence blastn 1985 58.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
16502836 16502836 PRJNA749559_P_NODE_5093_length_198_cov_3.007299_g5023_i0 PRJNA749559 5093 198 3.007299 5.95445202 root 1 Root_unresolved Root_unresolved 366 5.4e-97   NTclustered gi|2904934840|gb|PQ737764.1| 10090 g5023 i0 100 369.333333333333 198 0 100 0 1 198 5 202 Mus musculus lncRNA174 lncRNA, complete sequence blastn 73128 366 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;