RNAquarium Metadata Server
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contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJNA745923" and tax_phylum = "Kitrinoviricota"

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tax_superkingdom 1

tax_phylum 1

  • Kitrinoviricota · 10 ✖

tax_kingdom 1

bioproject 1

  • PRJNA745923 · 10 ✖

analysis 1

  • blastn · 10 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
724946 724946 PRJNA745923_S_NODE_40021_length_150_cov_2.242991_g39689_i0 PRJNA745923 40021 150 2.242991 3.3644865 Pestivirus tauri 3052626 Viruses Viruses 267 4.009999999999999e-67   NTclustered gi|1540352871|gb|MH231127.1| 54315 g39689 i0 98.667 99.7066666666667 150 2 100 0 1 150 2231 2380 Bovine viral diarrhea virus 2 isolate 53637c polyprotein gene, complete cds blastn 14956 267 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus tauri
4553228 4553228 PRJNA745923_S_NODE_23284_length_201_cov_1.518987_g22952_i0 PRJNA745923 23284 201 1.518987 3.05316387 Pestivirus bovis 3052619 Viruses Viruses 342 9.259999999999999e-90   NTclustered gi|2625903273|gb|ON676187.1| 11099 g22952 i0 97.5 99.4427860696517 200 5 99 0 1 200 3707 3508 Bovine viral diarrhea virus 1 strain Chilgok, complete genome blastn 19988 342 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
4553235 4553235 PRJNA745923_S_NODE_23664_length_199_cov_2.378205_g23332_i0 PRJNA745923 23664 199 2.378205 4.73262795 Pestivirus bovis 3052619 Viruses Viruses 296 7.23e-76   NTclustered gi|49614511|dbj|AB105677.1| 11099 g23332 i0 93.467 61.2361809045226 199 13 100 0 1 199 149 347 Bovine viral diarrhea virus 1 gene for structural glycoprotein E2, partial cds, isolate: AK Higashiyuri NCP/96 blastn 12186 296 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
10928923 10928923 PRJNA745923_S_NODE_4789_length_515_cov_2.682203_g4466_i0 PRJNA745923 4789 515 2.682203 13.81334545 Pestivirus bovis 3052619 Viruses Viruses 863 0   NTclustered gi|2858850717|gb|PQ613792.1| 11099 g4466 i0 96.893 97.7941747572816 515 16 100 0 1 515 43 557 Bovine viral diarrhea virus 1 isolate USMARC/PI-91-21/MDBK polyprotein gene, complete cds blastn 50364 863 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
16027474 16027474 PRJNA745923_S_NODE_32553_length_166_cov_2.203252_g32221_i0 PRJNA745923 32553 166 2.203252 3.65739832 Pestivirus bovis 3052619 Viruses Viruses 291 2.7099999999999998e-74   NTclustered gi|1129880259|gb|KX170497.1| 11099 g32221 i0 98.193 99.8192771084337 166 3 100 0 1 166 178 13 Bovine viral diarrhea virus 1 isolate V045 NS4A gene, partial cds blastn 16570 291 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
17302966 17302966 PRJNA745923_S_NODE_35594_length_158_cov_1.669565_g35262_i0 PRJNA745923 35594 158 1.669565 2.6379127000000002 Pestivirus bovis 3052619 Viruses Viruses 276 7.120000000000001e-70   NTclustered gi|800924328|gb|KP941589.1| 11099 g35262 i0 98.101 99.8607594936709 158 3 100 0 1 158 10350 10193 Bovine viral diarrhea virus 1 strain USMARC-55923 polyprotein gene, complete cds blastn 15778 276 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
19050574 19050574 PRJNA745923_S_NODE_14175_length_268_cov_4.271111_g13843_i0 PRJNA745923 14175 268 4.271111 11.44657748 Pestivirus 11095 Viruses Viruses 440 4.479999999999998e-119   NTclustered gi|2625903273|gb|ON676187.1| 11099 g13843 i0 96.269 99.9813432835821 268 10 100 0 1 268 9431 9698 Bovine viral diarrhea virus 1 strain Chilgok, complete genome blastn 26795 440 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
19050665 19050665 PRJNA745923_S_NODE_27435_length_183_cov_1.642857_g27103_i0 PRJNA745923 27435 183 1.642857 3.00642831 Pestivirus 11095 Viruses Viruses 300 5.040000000000001e-77   NTclustered gi|2625903273|gb|ON676187.1| 11099 g27103 i0 96.175 99.1584699453552 183 7 100 0 1 183 4720 4902 Bovine viral diarrhea virus 1 strain Chilgok, complete genome blastn 18146 300 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
20325364 20325364 PRJNA745923_S_NODE_28996_length_177_cov_2.149254_g28664_i0 PRJNA745923 28996 177 2.149254 3.80417958 Pestivirus 11095 Viruses Viruses 305 1.04e-78   NTclustered gi|2731951075|gb|PP770551.1| 11099 g28664 i0 97.74 99.774011299435 177 4 100 0 1 177 9897 10073 Bovine viral diarrhea virus 1 isolate YN2-11/2023, complete genome blastn 17660 305 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
23677778 23677778 PRJNA745923_S_NODE_26939_length_185_cov_1.352113_g26607_i0 PRJNA745923 26939 185 1.352113 2.50140905 Pestivirus bovis 3052619 Viruses Viruses 298 1.84e-76   NTclustered gi|1129880365|gb|KX170550.1| 11099 g26607 i0 95.676 99.972972972973 185 8 100 0 1 185 574 390 Bovine viral diarrhea virus 1 isolate V048 NS4B gene, partial cds blastn 18495 298 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;