RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA745923" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA745923 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2474238 2474238 PRJNA745923_S_NODE_23342_length_201_cov_0.911392_g23010_i0 PRJNA745923 23342 201 0.911392 1.83189792 root 1 Root_unresolved Root_unresolved 372 1.18e-98   NTclustered gi|1483583505|emb|LT631429.1| 204 g23010 i0 100 103.995024875622 201 0 100 0 1 201 33791 33591 Campylobacter showae genome assembly, plasmid: V blastn 20903 372 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter showae
6302879 6302879 PRJNA745923_S_NODE_25805_length_190_cov_1.217687_g25473_i0 PRJNA745923 25805 190 1.217687 2.3136053 Campylobacter 194 Bacteria Bacteria 339 1.12e-88   NTclustered gi|1483583505|emb|LT631429.1| 204 g25473 i0 98.947 259.926315789474 190 1 100 1 1 190 29425 29613 Campylobacter showae genome assembly, plasmid: V blastn 49386 339 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter showae
16501914 16501914 PRJNA745923_S_NODE_31653_length_169_cov_1.142857_g31321_i0 PRJNA745923 31653 169 1.142857 1.93142833 Campylobacter 194 Bacteria Bacteria 313 5.859999999999999e-81   NTclustered gi|1483583505|emb|LT631429.1| 204 g31321 i0 100 240.721893491124 169 0 100 0 1 169 30463 30295 Campylobacter showae genome assembly, plasmid: V blastn 40682 313 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter showae
21127583 21127583 PRJNA745923_S_NODE_7977_length_373_cov_2.612121_g7645_i0 PRJNA745923 7977 373 2.612121 9.74321133 Campylobacter ureolyticus 827 Bacteria Bacteria 689 0   NTclustered gi|1829985141|gb|CP050963.1| 827 g7645 i0 100 255.327077747989 373 0 100 0 1 373 203597 203225 Campylobacter ureolyticus strain FDAARGOS_673 chromosome blastn 95237 689 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter ureolyticus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;