RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

14 rows where analysis = "blastn", bioproject = "PRJNA745553" and tax_phylum = "Oomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 14 ✖

tax_clade 1

bioproject 1

  • PRJNA745553 · 14 ✖

analysis 1

  • blastn · 14 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2000161 2000161 PRJNA745553_S_NODE_17562_length_294_cov_7.407240_g17367_i0 PRJNA745553 17562 294 7.40724 21.7772856 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 460 3.82e-125   NTclustered gi|325194423|emb|FR825253.1| 890382 g17367 i0 98.479 89.4625850340136 263 1 88 3 24 283 599 861 Albugo laibachii Nc14, genomic contig CONTIG_1950_NC14_v4_1284_22758 blastn 26302 460 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
2474071 2474071 PRJNA745553_S_NODE_28042_length_232_cov_5.062893_g27847_i0 PRJNA745553 28042 232 5.062893 11.74591176 Peronospora 70742 SAR_Eukaryotes SAR_Eukaryotes 355 1.41e-93   NTclustered gi|948299304|ref|NC_028331.1| 230439 g27847 i0 97.143 93.6508620689655 210 6 91 0 23 232 749 958 Peronospora tabacina isolate 968-J2 mitochondrion, complete genome blastn 21727 355 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora tabacina
3275568 3275568 PRJNA745553_S_NODE_25103_length_248_cov_0.880000_g24908_i0 PRJNA745553 25103 248 0.88 2.1824 Phytopythium vexans 907947 SAR_Eukaryotes SAR_Eukaryotes 396 9e-106   NTclustered gi|90655144|gb|DQ361265.1| 907947 g24908 i0 95.565 100.346774193548 248 10 100 1 1 248 342 96 Pythium vexans large subunit ribosomal RNA gene, partial sequence blastn 24886 396 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Phytopythium Phytopythium vexans
8377815 8377815 PRJNA745553_S_NODE_7767_length_428_cov_1.985915_g7572_i0 PRJNA745553 7767 428 1.985915 8.4997162 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 292 2.23e-74   NTclustered gi|2795022084|ref|XM_067941291.1| 4785 g7572 i0 93.814 2.85747663551402 194 12 45 0 1 194 62 255 Phytophthora cinnamomi 40S ribosomal protein S30 (IUM83_16413), partial mRNA blastn 1223 292 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
9652604 9652604 PRJNA745553_S_NODE_19148_length_282_cov_4.712919_g18953_i0 PRJNA745553 19148 282 4.712919 13.29043158 Peronospora belbahrii 622444 SAR_Eukaryotes SAR_Eukaryotes 475 1.2999999999999999e-129   NTclustered gi|1235732003|gb|MF693906.1| 622444 g18953 i0 98.872 94.3049645390071 266 3 94 0 17 282 1095 1360 Peronospora belbahrii isolate RC16DM5 large subunit ribosomal RNA gene, partial sequence blastn 26594 475 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora belbahrii
10928074 10928074 PRJNA745553_S_NODE_15449_length_313_cov_6.937500_g15254_i0 PRJNA745553 15449 313 6.9375 21.714375 Phytophthora capsici 4784 SAR_Eukaryotes SAR_Eukaryotes 143 1.69e-29   NTclustered gi|189083887|gb|BT031403.1| 4784 g15254 i0 85.106 1.74121405750799 141 20 45 1 152 291 421 281 Phytophthora capsici clone CBOT69-P12 mRNA sequence blastn 545 143 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici
12203956 12203956 PRJNA745553_S_NODE_9650_length_390_cov_2.097792_g9455_i0 PRJNA745553 9650 390 2.097792 8.1813888 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 331 4.280000000000001e-86   NTclustered gi|166038792|emb|CU355022.1| 100861 g9455 i0 88.339 10.2589743589744 283 24 71 3 98 374 756 477 Aphanomyces euteiches cDNA blastn 4001 331 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
15227153 15227153 PRJNA745553_S_NODE_17792_length_292_cov_20.607306_g17597_i0 PRJNA745553 17792 292 20.607306 60.17333352 Pythiaceae 4782 SAR_Eukaryotes SAR_Eukaryotes 540 4.74e-149   NTclustered gi|1820797599|gb|MT192342.1| 4798 g17597 i0 100 99.3013698630137 292 0 100 0 1 292 333 42 Pythium hydnosporum isolate JZB3410001 large subunit ribosomal RNA gene, partial sequence blastn 28996 540 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium hydnosporum
15227257 15227257 PRJNA745553_S_NODE_8352_length_415_cov_289.581871_g8157_i0 PRJNA745553 8352 415 289.581871 1201.76476465 Hyaloperonospora 184462 SAR_Eukaryotes SAR_Eukaryotes 457 7.2399999999999994e-124   NTclustered gi|33520229|gb|AY273974.1| 162125 g8157 i0 97.736 64.110843373494 265 6 64 0 151 415 447 711 Hyaloperonospora brassicae large subunit ribosomal RNA gene, partial sequence blastn 26606 457 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora brassicae
17776337 17776337 PRJNA745553_S_NODE_12934_length_342_cov_2.107807_g12739_i0 PRJNA745553 12934 342 2.107807 7.20869994 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 390 6.03e-104   NTclustered gi|2794917654|ref|XM_067894117.1| 164328 g12739 i0 91.259 3.74269005847953 286 25 84 0 57 342 624 339 Phytophthora ramorum 60S ribosomal protein L26-1 (KRP23_8650), partial mRNA blastn 1280 390 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
18575986 18575986 PRJNA745553_S_NODE_28035_length_232_cov_5.245283_g27840_i0 PRJNA745553 28035 232 5.245283 12.16905656 uncultured Oomycota 179533 SAR_Eukaryotes SAR_Eukaryotes 263 8.8e-66   NTclustered gi|307940046|gb|HM441723.1| 179533 g27840 i0 91.237 84.5431034482759 194 16 83 1 7 199 194 1 Uncultured oomycete clone s0-Alf-45 large subunit ribosomal RNA gene, partial sequence blastn 19614 263 1 Eukaryota Sar   Oomycota         uncultured Oomycota
22876150 22876150 PRJNA745553_S_NODE_17498_length_295_cov_2.369369_g17303_i0 PRJNA745553 17498 295 2.369369 6.98963855 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 374 5.139999999999998e-99   NTclustered gi|66270180|gb|AY961474.1| 4787 g17303 i0 90.21 2.90508474576271 286 28 97 0 1 286 392 107 Phytophthora infestans clone MY-06-H-02 ribosomal protein S19 mRNA, complete cds blastn 857 374 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
23677029 23677029 PRJNA745553_S_NODE_1159_length_742_cov_7.097160_g1038_i0 PRJNA745553 1159 742 7.09716 52.6609272 Plasmopara viticola 143451 SAR_Eukaryotes SAR_Eukaryotes 1227 0   NTclustered gi|33520233|gb|AY273978.1| 143451 g1038 i0 96.515 100.506738544474 746 19 100 6 1 742 14 756 Plasmopara viticola large subunit ribosomal RNA gene, partial sequence blastn 74576 1227 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara viticola
23677092 23677092 PRJNA745553_S_NODE_15419_length_314_cov_1.460581_g15224_i0 PRJNA745553 15419 314 1.460581 4.58622434 Hyaloperonospora parasitica 123356 SAR_Eukaryotes SAR_Eukaryotes 370 7.14e-98   NTclustered gi|169643469|emb|CU469394.8| 123356 g15224 i0 87.898 1 314 38 100 0 1 314 16120 16433 H.parasitica DNA sequence from clone HpEmoy2-18C10, complete sequence blastn 314 370 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora parasitica

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;