RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA745553" and tax_phylum = "Deferribacterota"

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tax_superkingdom 1

tax_phylum 1

  • Deferribacterota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA745553 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10127372 10127372 PRJNA745553_S_NODE_28808_length_227_cov_3.000000_g28613_i0 PRJNA745553 28808 227 3 6.81 Deferribacter 53572 Bacteria Bacteria 167 6.9199999999999995e-37   NTclustered gi|470475553|ref|NR_076287.1| 197162 g28613 i0 85.542 127.004405286344 166 16 73 6 42 206 272 114 Deferribacter desulfuricans strain SSM1 23S ribosomal RNA gene, complete sequence blastn 28830 167 1 Bacteria   Pseudomonadati Deferribacterota Deferribacteres Deferribacterales Deferribacteraceae Deferribacter Deferribacter desulfuricans
10127403 10127403 PRJNA745553_S_NODE_4748_length_512_cov_3.963554_g4556_i0 PRJNA745553 4748 512 3.963554 20.29339648 Mucispirillum 248038 Bacteria Bacteria 658 0   NTclustered gi|2211256631|emb|OW091398.1| 248039 g4556 i0 90.562 80.87109375 498 45 97 2 1 497 1751768 1752264 Mucispirillum schaedleri isolate Mucispirillum_schaedleri_DSM104751 genome assembly, chromosome: Mucispirillum_schaedleri_1 blastn 41406 658 1 Bacteria   Pseudomonadati Deferribacterota Deferribacteres Deferribacterales Mucispirillaceae Mucispirillum Mucispirillum schaedleri
16501733 16501733 PRJNA745553_S_NODE_6013_length_472_cov_3.624060_g5819_i0 PRJNA745553 6013 472 3.62406 17.1055632 Mucispirillum 248038 Bacteria Bacteria 712 0   NTclustered gi|2211256631|emb|OW091398.1| 248039 g5819 i0 94.76 86.2733050847458 458 22 97 2 16 472 865437 865893 Mucispirillum schaedleri isolate Mucispirillum_schaedleri_DSM104751 genome assembly, chromosome: Mucispirillum_schaedleri_1 blastn 40721 712 1 Bacteria   Pseudomonadati Deferribacterota Deferribacteres Deferribacterales Mucispirillaceae Mucispirillum Mucispirillum schaedleri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;