RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA745553" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 8 ✖

tax_kingdom 1

bioproject 1

  • PRJNA745553 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2474121 2474121 PRJNA745553_S_NODE_7502_length_434_cov_1.972299_g7307_i0 PRJNA745553 7502 434 1.972299 8.55977766 Chthonomonas 1077265 Bacteria Bacteria 401 3.609999999999999e-107   NTclustered gi|526641997|ref|NR_103994.1| 454171 g7307 i0 87.679 162.65668202765 349 38 80 5 89 434 1556 1902 Chthonomonas calidirosea strain T49 23S ribosomal RNA gene, complete sequence blastn 70593 401 1 Bacteria   Bacillati Armatimonadota Chthonomonadia Chthonomonadales Chthonomonadaceae Chthonomonas Chthonomonas calidirosea
5026936 5026936 PRJNA745553_S_NODE_28824_length_227_cov_2.500000_g28629_i0 PRJNA745553 28824 227 2.5 5.675 Fimbriimonas 1005038 Bacteria Bacteria 254 5.16e-63   NTclustered gi|663071213|gb|CP007139.1| 661478 g28629 i0 88.942 55.5242290748899 208 20 91 3 11 217 29581 29786 Fimbriimonas ginsengisoli Gsoil 348, complete genome blastn 12604 254 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli
10928083 10928083 PRJNA745553_S_NODE_15969_length_308_cov_16.455319_g15774_i0 PRJNA745553 15969 308 16.455319 50.68238252 Fimbriimonas ginsengisoli 1005039 Bacteria Bacteria 274 5.64e-69   NTclustered gi|663071213|gb|CP007139.1| 661478 g15774 i0 86.992 0.798701298701299 246 28 79 4 24 267 1625878 1625635 Fimbriimonas ginsengisoli Gsoil 348, complete genome blastn 246 274 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli
10928266 10928266 PRJNA745553_S_NODE_27049_length_239_cov_4.253012_g26854_i0 PRJNA745553 27049 239 4.253012 10.16469868 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 224 4.3e-54   NTclustered gi|2076452338|gb|CP075364.1| 2682144 g26854 i0 88.421 97.928870292887 190 17 78 5 28 214 667597 667410 MAG: Fimbriimonadaceae bacterium isolate ACE_ARM1 chromosome blastn 23405 224 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium
12203651 12203651 PRJNA745553_S_NODE_21310_length_268_cov_1.579487_g21115_i0 PRJNA745553 21310 268 1.579487 4.23302516 uncultured Armatimonadetes bacterium 157466 Bacteria Bacteria 263 1.04e-65   NTclustered gi|2874253701|emb|OY969427.1| 157466 g21115 i0 84.791 219.369402985075 263 39 98 1 1 263 3407445 3407184 MAG: uncultured Armatimonadetes bacterium isolate MFD09671.bin.1.19 genome assembly, chromosome: 1 blastn 58791 263 1 Bacteria   Bacillati Armatimonadota         uncultured Armatimonadetes bacterium
16501615 16501615 PRJNA745553_S_NODE_18013_length_291_cov_1.481651_g17818_i0 PRJNA745553 18013 291 1.481651 4.31160441 Fimbriimonas 1005038 Bacteria Bacteria 322 1.86e-83   NTclustered gi|663071213|gb|CP007139.1| 661478 g17818 i0 86.689 88.2199312714777 293 36 100 3 1 291 28942 29233 Fimbriimonas ginsengisoli Gsoil 348, complete genome blastn 25672 322 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli
23677070 23677070 PRJNA745553_S_NODE_1419_length_712_cov_20.586854_g556_i1 PRJNA745553 1419 712 20.586854 146.57840048 Fimbriimonas sp. 1936159 Bacteria Bacteria 832 0   NTclustered gi|2778022393|emb|OZ123194.1| 1936159 g556 i1 89.697 214.009831460674 660 57 92 9 58 711 1687573 1688227 MAG: Fimbriimonas sp. isolate MsE-30jul19-LR-01 genome assembly, chromosome: 1 blastn 152375 832 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas sp.
24950929 24950929 PRJNA745553_S_NODE_5940_length_474_cov_6.049875_g5746_i0 PRJNA745553 5940 474 6.049875 28.6764075 uncultured Armatimonadetes bacterium 157466 Bacteria Bacteria 211 7.19e-50   NTclustered gi|2874254000|emb|OY970325.1| 157466 g5746 i0 83.478 66.746835443038 230 34 48 4 4 231 1305729 1305502 MAG: uncultured Armatimonadetes bacterium isolate MFD05942.bin.1.84 genome assembly, chromosome: 1 blastn 31638 211 1 Bacteria   Bacillati Armatimonadota         uncultured Armatimonadetes bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;