RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA744060" and tax_superkingdom = "Archaea"

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tax_superkingdom 1

  • Archaea · 3 ✖

tax_phylum 1

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA744060 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24949623 24949623 PRJNA744060_P_NODE_22260_length_343_cov_3.174074_g21931_i0 PRJNA744060 22260 343 3.174074 10.88707382 uncultured Methanoregulaceae archaeon 1392423 Archaea Archaea 198 3.94e-46   NTclustered gi|2874254037|emb|OY970361.1| 1392423 g21931 i0 85.714 46.3119533527697 189 25 55 2 49 236 2544725 2544912 MAG: uncultured Methanoregulaceae archaeon isolate MFD01476.bin.2.40 genome assembly, chromosome: 1 blastn 15885 198 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae   uncultured Methanoregulaceae archaeon
24949793 24949793 PRJNA744060_P_NODE_31360_length_293_cov_1.418182_g31031_i0 PRJNA744060 31360 293 1.418182 4.15527326 Haloferax mediterranei 2252 Archaea Archaea 54.7 0.008   NTclustered gi|640913992|gb|CP001868.2| 523841 g31031 i0 94.444 0.368600682593857 36 1 12 1 47 82 1848311 1848345 Haloferax mediterranei ATCC 33500, complete genome blastn 108 54.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloferax Haloferax mediterranei
24950063 24950063 PRJNA744060_P_NODE_48340_length_246_cov_1.323699_g48011_i0 PRJNA744060 48340 246 1.323699 3.25629954 Haloarcula regularis 3033392 Archaea Archaea 58.4 4.78e-4   NTclustered gi|2463595545|gb|CP119794.1| 3033392 g48011 i0 100 0.601626016260163 31 0 13 0 216 246 814474 814444 Haloarcula regularis strain SYNS111 chromosome, complete genome blastn 148 58.4 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Haloarcula Haloarcula regularis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;