RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA744060" and tax_phylum = "Platyhelminthes"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA744060 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8851520 8851520 PRJNA744060_P_NODE_33407_length_285_cov_1.367925_g33078_i0 PRJNA744060 33407 285 1.367925 3.89858625 Metazoa 33208 Platyhelminthes Platyhelminthes 54.7 0.007   NTclustered gi|1373861978|ref|XM_024497366.1| 6210 g33078 i0 100 0.466666666666667 29 0 10 0 254 282 149 121 Echinococcus granulosus Nipped-B-like protein (EGR_08117), partial mRNA blastn 133 54.7 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Cyclophyllidea Taeniidae Echinococcus Echinococcus granulosus
19850650 19850650 PRJNA744060_P_NODE_52396_length_237_cov_2.457317_g52067_i0 PRJNA744060 52396 237 2.457317 5.82384129 Spirometra erinaceieuropaei 99802 Platyhelminthes Platyhelminthes 65.8 2.73e-6   NTclustered gi|690553788|emb|LN108506.1| 99802 g52067 i0 91.489 2.38396624472574 47 4 20 0 15 61 3307 3261 Spirometra erinaceieuropaei genome assembly S_erinaceieuropaei ,scaffold SPER_scaffold0102179 blastn 565 65.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei
24150160 24150160 PRJNA744060_P_NODE_49339_length_244_cov_7.678363_g49010_i0 PRJNA744060 49339 244 7.678363 18.73520572 Rhabditophora 147100 Platyhelminthes Platyhelminthes 187 5.7799999999999984e-43   NTclustered gi|28273268|gb|AY157156.1| 84079 g49010 i0 89.933 63.2172131147541 149 9 61 5 97 244 2894 2751 Geocentrophora wagini 28S large subunit ribosomal RNA gene, partial sequence blastn 15425 187 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Lecithoepitheliata Prorhynchidae Geocentrophora Geocentrophora wagini

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;